Gene detail

Detail information of GWHGAAZE007117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14130.1	2.5395E-167	unnamed protein product [Coffea canephora]
Swissprot	tr\|P48513\|TF2B_SOYBN	8E-161	Transcription initiation factor IIB
trEMBL	tr\|A0A068V014\|A0A068V014_COFCA	9E-168	Coffea canephora DH200=94 genomic scaffold, scaffold_80 {ECO:0000313\|EMBL:CDP14130.1}
TAIR10	AT3G10330.1	2E-125	Cyclin-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	38634000	38637665	+
GWHAAZE00000002	mRNA	38634000	38637665	+
GWHAAZE00000002	exon	38634000	38634349	+
GWHAAZE00000002	exon	38635340	38635364	+
GWHAAZE00000002	exon	38635678	38635807	+
GWHAAZE00000002	exon	38636501	38636631	+
GWHAAZE00000002	exon	38636891	38636979	+
GWHAAZE00000002	exon	38637106	38637182	+
GWHAAZE00000002	exon	38637532	38637665	+
GWHAAZE00000002	CDS	38634000	38634349	+
GWHAAZE00000002	CDS	38635340	38635364	+
GWHAAZE00000002	CDS	38635678	38635807	+
GWHAAZE00000002	CDS	38636501	38636631	+
GWHAAZE00000002	CDS	38636891	38636979	+
GWHAAZE00000002	CDS	38637106	38637182	+
GWHAAZE00000002	CDS	38637532	38637665	+

Transcript Sequence
>GWHTAAZE007125 ATGGAGGATGATTACTGTACGGACTGCAGGAGGGAGACCGAAGTAGTATACGACCACAAGTCCGGCGATACGGTCTGTTCCGAGTGCGGACTCGTCCTCGAAGCTCGGTCCGTCGACGAGCACTCCGAGTGGCGCACCTTTGTTGATTCTACTGATGATCGTGACCCGACCCGGGTTGGTAGCCCCGTCAACCCTCTCCTTAGCCACGGCGGCCTCTCCACCATCATCTCCAGGGATAATGGCGGTGGCGGTAAAGGAGAGGCGTTCTTGAACCGGTTGCAGTGCCGCGGGACGGACCCCGACCGGGCTCTTGTTGAGGCCTTCGGGACAATCGCTACTATGTCTGATAGGTTGAGCCTCGTGGCAACTATAAAGGATAGAGCAAGTGAGATGTACAAGAGGTTGGAAGATCAGAAGTGCACGAAAGGAAGAAACGGTGATGCTTTAGCAGCTGCTTGCATTTACATTGCTTGTCGTAAAGAAGGCAAGCCCCGCACTGTTAAAGAAATTTGCACGATTGCAAATGGAGTGACAAAGAAAGAAATTGGAAAAGCAAAAGACTTGATTGTCAGACAATTGACGGACGAAATGGGTCCATCGATGGAGATGGGTACTATACATGCTGAGGACTATTTGAGGCGCTTTTGTTCCAATCTTGGAATGGGAAATAAAGAAGTTAAAGCTGTCCAAGAAGCTGTTCAGAAATCAAAGGAGTTTGATATAAGGAGAAGCCCTATATCAGTTGCTGCCGCGGTTATATACATGATTACTCAGCTTTCAAATACCAAGAAACCTCTCAAAGATATTTCGATCTCTACATTAGTTGCAGAAAACACCATTAAGAATGCATACAAGGACATTTATCCCCATGCTTCAAGGATAGTACCAGACTGGTTTTCCAGGGGAAATGACCTCAACAAGCTTCTCAGAGCCTAA

Network for GWHGAAZE007117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08271.13	TF_Zn_Ribbon	6	47	3.30E-13
PF00382.20	TFIIB	111	182	6.10E-19
PF00382.20	TFIIB	213	280	1.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03124	TFIIB, GTF2B, SUA7, tfb	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0070897	biological_process	transcription preinitiation complex assembly
GO:0017025	molecular_function	TBP-class protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.480
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.083
	SRR3591708	Shoot apex	0.962
	SRR3591709	Stem	1.112
	SRR3591710	White floral bud	0.647
	SRR3591711	White flower	1.113
	SRR3591712	Green floral bud	0.297
	SRR3591713	Yellow flower	0.411
SRP173429	SRR8316895	Juvenile bud stage	0.209
	SRR8316896	Juvenile bud stage	0.057
	SRR8316897	Juvenile bud stage	0.115
	SRR8316894	Third green stage	0.070
	SRR8316900	Third green stage	0.103
	SRR8316901	Third green stage	0.429
	SRR8316898	Complete white stage	0.198
	SRR8316899	Complete white stage	0.446
	SRR8316903	Complete white stage	0.408
	SRR8316902	Silver flowering stage	0.259
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.097
	SRR8316906	Gold flowering stage	0.393
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.158
SRP132670	SRR6706286	Control	0.361
	SRR6706287	Light intensity 50%	0.319
	SRR6706288	Light intensity 20%	0.195
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.956
	CNS0095593	Slightly white alabastrum(diploid) 2	0.691
	CNS0095594	Slightly white alabastrum(diploid) 3	1.759
	CNS0095595	Whole white alabastrum(diploid) 2	0.270
	CNS0095596	Whole white alabastrum(diploid) 3	0.123
	CNS0095597	Whole white alabastrum(diploid) 4	0.992
	CNS0095598	Silvery flower (diploied) 1	0.219
	CNS0095599	Silvery flower (diploied) 2	0.188
	CNS0095600	Silvery flower (diploied) 3	0.255
	CNS0095601	Golden flower (diploid) 1	0.139
	CNS0095602	Golden flower (diploid) 2	0.391
	CNS0095603	Golden flower (diploid) 3	0.588
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.274
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.729
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.130
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.038
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.708
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.554
	CNS0095610	Silvery flower (tetraploid) 1	0.560
	CNS0095611	Silvery flower (tetraploid) 2	0.598
	CNS0095612	Silvery flower (tetraploid) 3	0.455
	CNS0095613	Golden flower (tetraploid) 1	0.220
	CNS0095614	Golden flower (tetraploid) 2	0.150
	CNS0095615	Golden flower (tetraploid) 3	0.355
CRA001975	CRR073297	Stem 1	0.651
	CRR073298	Stem 2	0.455
	CRR073299	Stem 3	0.801
	CRR073300	Leaf 1	0.704
	CRR073301	Leaf 2	0.770
	CRR073302	Leaf 3	0.187
	CRR073303	Juvenile bud 1	1.062
	CRR073304	Juvenile bud 2	0.456
	CRR073305	Juvenile bud 3	0.276
	CRR073306	Third green 1	1.686
	CRR073307	Third green 2	1.316
	CRR073308	Third green 3	0.699
	CRR073309	Second white 1	1.115
	CRR073310	Second white 2	0.478
	CRR073311	Second white 3	0.094
	CRR073312	Silver flowering 1	0.105
	CRR073313	Silver flowering 2	0.479
	CRR073314	Silver flowering 3	0.054
	CRR073315	Gold flowering 1	0.337
	CRR073316	Gold flowering 2	0.429
	CRR073317	Gold flowering 3	0.226
	CRR073318	Tawny withering 1	0.252
	CRR073319	Tawny withering 2	0.238
	CRR073320	Tawny withering 3	0.073