Detail information of GWHGAAZE007142


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007145566.10hypothetical protein PHAVU_007G249300g [Phaseolus vulgaris]
Swissprottr|P45951|ARP_ARATH0Apurinic endonuclease-redox protein
trEMBLtr|V7BKI4|V7BKI4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17560.1}
TAIR10AT2G41460.17E-148apurinic endonuclease-redox protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3899618239004178-
GWHAAZE00000002mRNA3899618239004178-
GWHAAZE00000002exon3900375639004178-
GWHAAZE00000002exon3900278239002895-
GWHAAZE00000002exon3900144839001585-
GWHAAZE00000002exon3900105739001104-
GWHAAZE00000002exon3899987638999956-
GWHAAZE00000002exon3899896438999123-
GWHAAZE00000002exon3899618238996725-
GWHAAZE00000002CDS3900375639004178-
GWHAAZE00000002CDS3900278239002895-
GWHAAZE00000002CDS3900144839001585-
GWHAAZE00000002CDS3900105739001104-
GWHAAZE00000002CDS3899987638999956-
GWHAAZE00000002CDS3899896438999123-
GWHAAZE00000002CDS3899660438996725-
GWHAAZE00000002three_prime_UTR3899618238996603-
Transcript Sequence

Network for GWHGAAZE007142

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03372.24Exo_endo_phos923523.00E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01142E3.1.11.2, xthA Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0003677molecular_functionDNA binding
GO:0004519molecular_functionendonuclease activity
GO:0004518molecular_functionnuclease activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.024
SRR3591706second leaf8.317
SRR3591707mature leaf10.875
SRR3591708Shoot apex20.559
SRR3591709Stem15.223
SRR3591710White floral bud12.690
SRR3591711White flower14.539
SRR3591712Green floral bud15.759
SRR3591713Yellow flower11.466
SRP173429 SRR8316895Juvenile bud stage 19.539
SRR8316896Juvenile bud stage 20.510
SRR8316897Juvenile bud stage 9.769
SRR8316894Third green stage 9.152
SRR8316900Third green stage 21.957
SRR8316901Third green stage 21.147
SRR8316898Complete white stage 6.529
SRR8316899Complete white stage 31.168
SRR8316903Complete white stage 9.874
SRR8316902Silver flowering stage5.236
SRR8316904Silver flowering stage7.688
SRR8316905Silver flowering stage3.471
SRR8316906Gold flowering stage 10.641
SRR8316907Gold flowering stage 8.961
SRR8316908Gold flowering stage 10.416
SRP132670SRR6706286Control8.838
SRR6706287Light intensity 50%9.320
SRR6706288Light intensity 20%9.973
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.354
CNS0095593Slightly white alabastrum(diploid) 220.565
CNS0095594Slightly white alabastrum(diploid) 318.603
CNS0095595Whole white alabastrum(diploid) 218.387
CNS0095596Whole white alabastrum(diploid) 318.262
CNS0095597Whole white alabastrum(diploid) 420.706
CNS0095598Silvery flower (diploied) 121.709
CNS0095599Silvery flower (diploied) 217.005
CNS0095600Silvery flower (diploied) 314.303
CNS0095601Golden flower (diploid) 116.848
CNS0095602Golden flower (diploid) 216.005
CNS0095603Golden flower (diploid) 314.883
CNS0095604Slightly white alabastrum(tetraploid) 118.518
CNS0095605Slightly white alabastrum(tetraploid) 217.641
CNS0095606Slightly white alabastrum(tetraploid) 319.859
CNS0095607Whole white alabastrum(tetraploid) 111.090
CNS0095608Whole white alabastrum(tetraploid) 210.771
CNS0095609Whole white alabastrum(tetraploid) 317.315
CNS0095610Silvery flower (tetraploid) 19.791
CNS0095611Silvery flower (tetraploid) 212.738
CNS0095612Silvery flower (tetraploid) 39.650
CNS0095613Golden flower (tetraploid) 16.317
CNS0095614Golden flower (tetraploid) 210.007
CNS0095615Golden flower (tetraploid) 35.747
CRA001975CRR073297Stem 112.970
CRR073298Stem 210.774
CRR073299Stem 311.669
CRR073300Leaf 112.967
CRR073301Leaf 28.831
CRR073302Leaf 310.344
CRR073303Juvenile bud 110.559
CRR073304Juvenile bud 27.625
CRR073305Juvenile bud 310.027
CRR073306Third green 12.476
CRR073307Third green 22.196
CRR073308Third green 32.319
CRR073309Second white 13.251
CRR073310Second white 23.753
CRR073311Second white 33.603
CRR073312Silver flowering 12.464
CRR073313Silver flowering 21.769
CRR073314Silver flowering 32.766
CRR073315Gold flowering 110.985
CRR073316Gold flowering 214.594
CRR073317Gold flowering 37.822
CRR073318Tawny withering 112.717
CRR073319Tawny withering 211.589
CRR073320Tawny withering 311.040