Detail information of GWHGAAZE007145


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264536.18.0903E-124PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Vitis vinifera]
Swissprottr|Q689D6|RPD1_ARATH2E-51Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBLtr|F6H9J8|F6H9J8_VITVI3E-124Putative uncharacterized protein {ECO:0000313|EMBL:CCB48891.1}
TAIR10AT1G06440.11E-95Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3904021739040981+
GWHAAZE00000002mRNA3904021739040981+
GWHAAZE00000002exon3904021739040419+
GWHAAZE00000002exon3904046239040981+
GWHAAZE00000002CDS3904021739040419+
GWHAAZE00000002CDS3904046239040981+
Transcript Sequence

Network for GWHGAAZE007145

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0247


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11955.9PORR12145.60E-77
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.874
SRR3591706second leaf12.888
SRR3591707mature leaf11.626
SRR3591708Shoot apex22.113
SRR3591709Stem18.124
SRR3591710White floral bud10.930
SRR3591711White flower8.790
SRR3591712Green floral bud10.929
SRR3591713Yellow flower6.499
SRP173429 SRR8316895Juvenile bud stage 3.656
SRR8316896Juvenile bud stage 5.902
SRR8316897Juvenile bud stage 1.578
SRR8316894Third green stage 2.098
SRR8316900Third green stage 6.140
SRR8316901Third green stage 5.345
SRR8316898Complete white stage 2.036
SRR8316899Complete white stage 7.475
SRR8316903Complete white stage 4.571
SRR8316902Silver flowering stage2.086
SRR8316904Silver flowering stage2.779
SRR8316905Silver flowering stage1.250
SRR8316906Gold flowering stage 3.855
SRR8316907Gold flowering stage 3.364
SRR8316908Gold flowering stage 3.437
SRP132670SRR6706286Control1.906
SRR6706287Light intensity 50%1.742
SRR6706288Light intensity 20%1.719
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.636
CNS0095593Slightly white alabastrum(diploid) 22.091
CNS0095594Slightly white alabastrum(diploid) 31.436
CNS0095595Whole white alabastrum(diploid) 21.852
CNS0095596Whole white alabastrum(diploid) 33.327
CNS0095597Whole white alabastrum(diploid) 41.903
CNS0095598Silvery flower (diploied) 13.363
CNS0095599Silvery flower (diploied) 24.544
CNS0095600Silvery flower (diploied) 33.799
CNS0095601Golden flower (diploid) 18.210
CNS0095602Golden flower (diploid) 23.928
CNS0095603Golden flower (diploid) 34.567
CNS0095604Slightly white alabastrum(tetraploid) 13.381
CNS0095605Slightly white alabastrum(tetraploid) 22.400
CNS0095606Slightly white alabastrum(tetraploid) 35.887
CNS0095607Whole white alabastrum(tetraploid) 12.001
CNS0095608Whole white alabastrum(tetraploid) 20.778
CNS0095609Whole white alabastrum(tetraploid) 33.376
CNS0095610Silvery flower (tetraploid) 13.187
CNS0095611Silvery flower (tetraploid) 22.519
CNS0095612Silvery flower (tetraploid) 31.958
CNS0095613Golden flower (tetraploid) 11.413
CNS0095614Golden flower (tetraploid) 22.441
CNS0095615Golden flower (tetraploid) 31.324
CRA001975CRR073297Stem 17.611
CRR073298Stem 27.300
CRR073299Stem 32.997
CRR073300Leaf 14.726
CRR073301Leaf 25.084
CRR073302Leaf 32.269
CRR073303Juvenile bud 12.762
CRR073304Juvenile bud 22.233
CRR073305Juvenile bud 33.130
CRR073306Third green 10.079
CRR073307Third green 20.510
CRR073308Third green 30.596
CRR073309Second white 10.006
CRR073310Second white 21.286
CRR073311Second white 30.329
CRR073312Silver flowering 10.497
CRR073313Silver flowering 20.907
CRR073314Silver flowering 30.433
CRR073315Gold flowering 11.412
CRR073316Gold flowering 25.186
CRR073317Gold flowering 33.579
CRR073318Tawny withering 14.062
CRR073319Tawny withering 21.861
CRR073320Tawny withering 34.636