Gene detail

Detail information of GWHGAAZE007156

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011075385.1	PREDICTED: triacylglycerol lipase SDP1-like [Sesamum indicum]
Swissprot	tr\|Q9LZA6\|SDP1_ARATH	Triacylglycerol lipase SDP1
trEMBL	tr\|M5VTY7\|M5VTY7_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ04511.1}
TAIR10	AT5G04040.1	Patatin-like phospholipase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	39286565	39290344	+
GWHAAZE00000002	mRNA	39286565	39290344	+
GWHAAZE00000002	exon	39286565	39287995	+
GWHAAZE00000002	exon	39288461	39288604	+
GWHAAZE00000002	exon	39289439	39290344	+
GWHAAZE00000002	CDS	39286565	39287995	+
GWHAAZE00000002	CDS	39288461	39288604	+
GWHAAZE00000002	CDS	39289439	39290344	+

Transcript Sequence
>GWHTAAZE007164 ATGGATATAAGTAACGAGGCTAGTGTGGACCCATTTTCGATTGGACCTTCAACAATTGTGGGTCGGACAATTGCATTCAGAGTCTTGTTCTGTAAGTCAATGTCTCATTTTAGGCATCAACTCGTTCGTATATTGTTAAATTATTTACACCGAGCTAAAAAATACACAACGGACTATTTGAAACCCATGATCTCGTGGTTTCATCCCCGCAACCCACAAGGGATATTGGTAATGGTGACTTTAATAGCATTCGTTTTAAAGCGGTACACTAATGTAAAAGTGAAGGCCGAGATGGCTTACCGGAGGAAATTTTGGAGGAATATGATGAGGGCAGCGTTAACCTACGAGGAATGGGCCCATGCAGCTAAAATGCTTGAAAAAGAAACCCCCAAAATGAATGAGTCTAACTTGTACGATGAAGAATTAGTGAGGAATAAACTCCAAGAACTTTGGCACCGTCGCCAAGAAGGATCTTTAAGAGATATTATATTTTGTATGCGAGCTGATCTTGTTAGAAATCTTGGAAATATGTGTAATCCCGAGCTTCATAAGGGGAGGCTTCAAGTGCCTAAACTCATAAAAGAGTATATAGACGAGGTCTCGTTTCAATTGAGAATGGTTTGTGACTCGGATTCCGAGGAGCTTCTATTAGAGGAAAAGCTTGCTTTTATGCATGAAACCCGACATGCTTTTGGTAGAACCGCTTTGCTTTTGAGTGGTGGTGCTTCCCTTGGGGCTTTCCACGTGGGGGTGGTGAAAACATTAGTAGAGCATAAGCTTTTGCCTCGTATAATCGCAGGTTCAAGTGTGGGGTCTGTTATGTGCTCTGTTGTCGCCACTCGTTCCTGGCCTGAACTCCAAAGCTTCTTTGAAGATTCTTGGCATTCGTTTCAATTTTTTGACCAAATGGGCGGGATCTTCACCACTTTCAAGAGGGTAATGACCCGAGGGGCGGTCCACGAGATTCGACAATTGCAAATGATGTTAAGGCATTTAACGAATAATCTTACATTTCAAGAAGCTTACGATATGACGGGTCGGATTCTTGGGATTACGGTTTGTTCCCCAAGAAAACACGAACCTCCAAGGTGTCTTAATTACTTGACTTCACCTCATGTAGTTATTTGGAGCGCTGTTACGGCCTCTTGTGCTTTCCCGGGACTTTTTGAAGCTCAAGAACTAATGGCAAAGGATAGGAGCGGAGAAATTGTGCCTTATCATCCGCCGTTTCATTGGGGTCCCGAGGAGGCGTCTGGTACGTCCGTTCGTCGATGGAGAGATGGTAGTTTGGAGATTGATTTGCCGATGATGCAGTTGAAAGAGTTGTTTAACGTCAATCACTTTATTGTGAGCCAAGCGAATCCTCATATTGCACCTTTGCTTAGGATAAAGGATATTGTGAGAGCTTATGGAGGCAACTTTGCAGCAAAGCTTGCTCATCTAGTGGAGATGGAGGTGAAACACAGATGCAACCAGATACTGGAACTTGGATTTCCTCTAGGAGGACTTGCCAAGCTATTTGCTCAAGATTGGGAGGGTGATGTCACCGTTGTAATGCCTGCAACCTTGGCTCAGTACTCAAAAATCATACAAAATCCATCTCATGTGGAACTTCAAAAGGCAGCCAACCAAGGCAGAAGGTGCACATGGGAGAAGCTCTCGGCTATAAAAGCAAACTGTGGAATCGAGCTCGCTCTTGATGAATGTGTTGCCCTACTCAATCGCATGCGTCGATTGAGGAGGAGTGCTGAGAGAGCCGCCGCAGCGTCCCAGGGCCTAACATCCACCACCCGATTCAACGCTTCCAAACGAATTCCCTCTTGGAATCGGATCGCCCGGGAGAACTCAACAGGATCCCTCGAAGAATTCCTCCTCGCTGATGTGGCCCCTTCACTCCACCAAGGTGGATCCGCCAGCCAGAACTGGCGAGCCCACCGCACCGTCCAAGACGGGAGCGATAGCGAATCCGAGAGCGTCGATCTCAATACATGGACACGGTCTGGCGGGCCCCTAATGAGGACCACCTCGGCTGATATGTTCATTGATTTCTTCCAAAACTTGGATAAAGGGACGGTGGTGATGCAGGACGGGGTCCCTCATTACCAGAGCCCAAGAGGTGTAGCGACAGATCGGAGCTTGGAGACAGATTCCAATCATTACAGGGTCCATAGCGGTCCGAGCATAATGGTGGCCGAGGGTGACTTTTTGCAGCCAGAACGGATTCATAACGGGATTGTGTTCAACGTGGTGAAGAAGGAGGTGTTTACCCCTTCGAACAGGAGCCACGATTCGGAGACCAATGGCTCACCTCATGATGCGTTTACTGAGTGTGTGCCTCTTGATTGCCCCGAGAAGGAAATGGACGCGAGCTCGACGTCGGATTATGGTGACGGTGAAACGGCTCGTGAAAATGGTCCGAATGGAACAGGCCCCGTTGAGGACCCCAAGAACCGTTTGGCTGCGGGTGATATGGATGTTTGA

Network for GWHGAAZE007156

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11815.9	DUF3336	98	229	2.20E-27
PF01734.23	Patatin	236	415	7.40E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14674	TGL4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Arachidonic acid metabolism	map00590
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0004806	molecular_function	triglyceride lipase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.670
	SRR3591706	second leaf	0.559
	SRR3591707	mature leaf	1.712
	SRR3591708	Shoot apex	2.240
	SRR3591709	Stem	0.395
	SRR3591710	White floral bud	9.426
	SRR3591711	White flower	4.037
	SRR3591712	Green floral bud	8.526
	SRR3591713	Yellow flower	3.377
SRP173429	SRR8316895	Juvenile bud stage	3.744
	SRR8316896	Juvenile bud stage	2.140
	SRR8316897	Juvenile bud stage	1.238
	SRR8316894	Third green stage	1.140
	SRR8316900	Third green stage	7.218
	SRR8316901	Third green stage	6.962
	SRR8316898	Complete white stage	0.978
	SRR8316899	Complete white stage	8.638
	SRR8316903	Complete white stage	1.927
	SRR8316902	Silver flowering stage	0.373
	SRR8316904	Silver flowering stage	0.782
	SRR8316905	Silver flowering stage	0.344
	SRR8316906	Gold flowering stage	1.006
	SRR8316907	Gold flowering stage	0.528
	SRR8316908	Gold flowering stage	0.933
SRP132670	SRR6706286	Control	4.297
	SRR6706287	Light intensity 50%	4.973
	SRR6706288	Light intensity 20%	4.789
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.053
	CNS0095593	Slightly white alabastrum(diploid) 2	5.155
	CNS0095594	Slightly white alabastrum(diploid) 3	5.658
	CNS0095595	Whole white alabastrum(diploid) 2	15.375
	CNS0095596	Whole white alabastrum(diploid) 3	17.587
	CNS0095597	Whole white alabastrum(diploid) 4	21.171
	CNS0095598	Silvery flower (diploied) 1	3.286
	CNS0095599	Silvery flower (diploied) 2	6.152
	CNS0095600	Silvery flower (diploied) 3	4.175
	CNS0095601	Golden flower (diploid) 1	8.710
	CNS0095602	Golden flower (diploid) 2	8.513
	CNS0095603	Golden flower (diploid) 3	7.800
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.345
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.211
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.202
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.265
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.842
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.935
	CNS0095610	Silvery flower (tetraploid) 1	2.883
	CNS0095611	Silvery flower (tetraploid) 2	3.280
	CNS0095612	Silvery flower (tetraploid) 3	2.859
	CNS0095613	Golden flower (tetraploid) 1	2.821
	CNS0095614	Golden flower (tetraploid) 2	3.213
	CNS0095615	Golden flower (tetraploid) 3	3.522
CRA001975	CRR073297	Stem 1	3.066
	CRR073298	Stem 2	3.315
	CRR073299	Stem 3	2.161
	CRR073300	Leaf 1	7.333
	CRR073301	Leaf 2	6.533
	CRR073302	Leaf 3	3.088
	CRR073303	Juvenile bud 1	5.291
	CRR073304	Juvenile bud 2	5.095
	CRR073305	Juvenile bud 3	0.931
	CRR073306	Third green 1	1.080
	CRR073307	Third green 2	1.319
	CRR073308	Third green 3	1.017
	CRR073309	Second white 1	0.671
	CRR073310	Second white 2	0.792
	CRR073311	Second white 3	0.537
	CRR073312	Silver flowering 1	1.499
	CRR073313	Silver flowering 2	1.279
	CRR073314	Silver flowering 3	1.306
	CRR073315	Gold flowering 1	1.341
	CRR073316	Gold flowering 2	2.589
	CRR073317	Gold flowering 3	3.192
	CRR073318	Tawny withering 1	1.865
	CRR073319	Tawny withering 2	5.254
	CRR073320	Tawny withering 3	0.948