Gene detail

Detail information of GWHGAAZE007162

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275769.1	0	PREDICTED: lycopene beta cyclase, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q43503\|LCYB_SOLLC	0	Lycopene beta cyclase, chloroplastic (Precursor)
trEMBL	tr\|F6HLP6\|F6HLP6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55302.1}
TAIR10	AT3G10230.1	5E-125	lycopene cyclase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	39469801	39470742	+
GWHAAZE00000002	mRNA	39469801	39470742	+
GWHAAZE00000002	exon	39469801	39470742	+
GWHAAZE00000002	CDS	39469801	39470742	+

Transcript Sequence
>GWHTAAZE007170 ATGGATACTTTGCTGAAGACTCATAATAAGCTTCAATTTCTTCACCCACTTCATGGGTTTGCAGAGAAAGTTAGCACACTGAGCTCTTCTAAGCTTCAAAACCATGAGATTAGGTTTGGTTTTGGTCCAAAGAGATCTCATCCGAAATTGGGTAAAATTAGTTCTCTTAGGGGAAGTAGTAGTGCCCTTTTGGAGCTTGTTCAAGAAACCAAGAAGGAAAATCTTGAATTTGAGCTTCCCTTGTATGACCCTTCAAAGGGTCTAGTGGTGGACTTAGCGGTGGTGGGTGGCGGGCCTGCAGGGCTTGCGGTGGCACAGCAAGTCTCGGAGGCCGGGCTATCGGTTTGCTCAATTGACCCTTGTCCCAAATTGATATGGCCCAACAATTACGGGGTTTGGGTGGATGAATTTGAGGCCATGGATTTGCTTGATTGCCTTGACACTACTTGGTCCGGTGCTGTCGTTTATATTGATGAAAATTCTACTAAAGAACTTGGTAGACCTTATGGGAGGGTTAATAGGAAGCAGCTAAAATCGAAAATGATGCAAAAATGCATATCGAATGGTGTTAAGTTCCATCAAGCTAAGGTTATAAAAGTTATTCATGAGGAAACCAAATCTTTCTTGATTTGCAATGATGGGGTCACTGTTCAAGCTAGCGTAGTTCTTGATGCAACCGGCTTTTCGAGGTGTCTGGTTCAATATGATAAGCCTTATAATCCTGGTTACCAAGTGGCATACGGTATCTTAGCTGAAGTAGAAGAACACCCATTCGATGTAGACAAAATGGTCTTCATGGATTGGAGAGATTCGCATTTGGACCAAAATTTGGAACTAAAAGCGAGAAATAGCAAGATCCCCACTTTCCTTTATGCAATGCCCTTTTCATCTAATAAGATATTTCTCGAGGAAACATCACTTGTAGCTCGCCCGGGCTACTGA

Network for GWHGAAZE007162

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05834.13	Lycopene_cycl	91	311	2.00E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06443	lcyB, crtL1, crtY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0016117	biological_process	carotenoid biosynthetic process
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.414
	SRR3591706	second leaf	34.489
	SRR3591707	mature leaf	54.644
	SRR3591708	Shoot apex	24.702
	SRR3591709	Stem	14.819
	SRR3591710	White floral bud	17.524
	SRR3591711	White flower	23.858
	SRR3591712	Green floral bud	13.977
	SRR3591713	Yellow flower	20.111
SRP173429	SRR8316895	Juvenile bud stage	5.911
	SRR8316896	Juvenile bud stage	6.325
	SRR8316897	Juvenile bud stage	2.450
	SRR8316894	Third green stage	4.215
	SRR8316900	Third green stage	13.693
	SRR8316901	Third green stage	10.689
	SRR8316898	Complete white stage	9.814
	SRR8316899	Complete white stage	23.982
	SRR8316903	Complete white stage	16.193
	SRR8316902	Silver flowering stage	9.852
	SRR8316904	Silver flowering stage	14.388
	SRR8316905	Silver flowering stage	7.009
	SRR8316906	Gold flowering stage	27.849
	SRR8316907	Gold flowering stage	18.814
	SRR8316908	Gold flowering stage	23.500
SRP132670	SRR6706286	Control	14.251
	SRR6706287	Light intensity 50%	11.118
	SRR6706288	Light intensity 20%	14.221
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.850
	CNS0095593	Slightly white alabastrum(diploid) 2	5.535
	CNS0095594	Slightly white alabastrum(diploid) 3	3.622
	CNS0095595	Whole white alabastrum(diploid) 2	5.488
	CNS0095596	Whole white alabastrum(diploid) 3	4.459
	CNS0095597	Whole white alabastrum(diploid) 4	4.991
	CNS0095598	Silvery flower (diploied) 1	14.964
	CNS0095599	Silvery flower (diploied) 2	13.822
	CNS0095600	Silvery flower (diploied) 3	26.385
	CNS0095601	Golden flower (diploid) 1	10.683
	CNS0095602	Golden flower (diploid) 2	23.954
	CNS0095603	Golden flower (diploid) 3	22.363
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.280
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.705
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.065
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.762
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.858
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.205
	CNS0095610	Silvery flower (tetraploid) 1	22.836
	CNS0095611	Silvery flower (tetraploid) 2	24.364
	CNS0095612	Silvery flower (tetraploid) 3	13.588
	CNS0095613	Golden flower (tetraploid) 1	13.511
	CNS0095614	Golden flower (tetraploid) 2	22.742
	CNS0095615	Golden flower (tetraploid) 3	31.463
CRA001975	CRR073297	Stem 1	13.645
	CRR073298	Stem 2	12.977
	CRR073299	Stem 3	14.044
	CRR073300	Leaf 1	9.143
	CRR073301	Leaf 2	10.998
	CRR073302	Leaf 3	11.154
	CRR073303	Juvenile bud 1	13.145
	CRR073304	Juvenile bud 2	18.112
	CRR073305	Juvenile bud 3	14.661
	CRR073306	Third green 1	14.365
	CRR073307	Third green 2	10.470
	CRR073308	Third green 3	13.137
	CRR073309	Second white 1	24.130
	CRR073310	Second white 2	17.427
	CRR073311	Second white 3	20.944
	CRR073312	Silver flowering 1	12.315
	CRR073313	Silver flowering 2	5.813
	CRR073314	Silver flowering 3	5.791
	CRR073315	Gold flowering 1	80.588
	CRR073316	Gold flowering 2	96.401
	CRR073317	Gold flowering 3	116.449
	CRR073318	Tawny withering 1	12.803
	CRR073319	Tawny withering 2	8.396
	CRR073320	Tawny withering 3	10.569