Detail information of GWHGAAZE007163


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAK07430.1AF321534_14.688E-102lycopene beta-cyclase [Adonis aestivalis var. palaestina]
Swissprottr|Q40424|LCYB_NARPS9E-100Lycopene beta cyclase, chloroplastic/chromoplastic (Precursor)
trEMBLtr|Q9AXL1|Q9AXL1_9MAGN2E-102Lycopene beta-cyclase {ECO:0000313|EMBL:AAK07430.1}
TAIR10AT3G10230.22E-66lycopene cyclase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene3947081539471318+
GWHAAZE00000002mRNA3947081539471318+
GWHAAZE00000002exon3947081539471318+
GWHAAZE00000002CDS3947081539471318+
Transcript Sequence

Network for GWHGAAZE007163

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05834.13Lycopene_cycl31447.80E-49
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K06443lcyB, crtL1, crtY Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carotenoid biosynthesismap00906

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.800
SRR3591706second leaf40.064
SRR3591707mature leaf56.875
SRR3591708Shoot apex32.724
SRR3591709Stem14.060
SRR3591710White floral bud19.701
SRR3591711White flower24.025
SRR3591712Green floral bud13.419
SRR3591713Yellow flower23.334
SRP173429 SRR8316895Juvenile bud stage 10.553
SRR8316896Juvenile bud stage 8.567
SRR8316897Juvenile bud stage 5.685
SRR8316894Third green stage 5.171
SRR8316900Third green stage 15.054
SRR8316901Third green stage 16.448
SRR8316898Complete white stage 12.060
SRR8316899Complete white stage 25.126
SRR8316903Complete white stage 15.890
SRR8316902Silver flowering stage14.051
SRR8316904Silver flowering stage13.140
SRR8316905Silver flowering stage8.321
SRR8316906Gold flowering stage 25.632
SRR8316907Gold flowering stage 20.155
SRR8316908Gold flowering stage 20.960
SRP132670SRR6706286Control11.480
SRR6706287Light intensity 50%12.594
SRR6706288Light intensity 20%11.653
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.437
CNS0095593Slightly white alabastrum(diploid) 218.203
CNS0095594Slightly white alabastrum(diploid) 314.963
CNS0095595Whole white alabastrum(diploid) 212.304
CNS0095596Whole white alabastrum(diploid) 319.781
CNS0095597Whole white alabastrum(diploid) 414.744
CNS0095598Silvery flower (diploied) 124.931
CNS0095599Silvery flower (diploied) 229.114
CNS0095600Silvery flower (diploied) 327.973
CNS0095601Golden flower (diploid) 126.957
CNS0095602Golden flower (diploid) 227.260
CNS0095603Golden flower (diploid) 329.408
CNS0095604Slightly white alabastrum(tetraploid) 116.214
CNS0095605Slightly white alabastrum(tetraploid) 216.783
CNS0095606Slightly white alabastrum(tetraploid) 317.473
CNS0095607Whole white alabastrum(tetraploid) 19.988
CNS0095608Whole white alabastrum(tetraploid) 27.932
CNS0095609Whole white alabastrum(tetraploid) 313.849
CNS0095610Silvery flower (tetraploid) 126.208
CNS0095611Silvery flower (tetraploid) 228.116
CNS0095612Silvery flower (tetraploid) 317.808
CNS0095613Golden flower (tetraploid) 125.156
CNS0095614Golden flower (tetraploid) 226.777
CNS0095615Golden flower (tetraploid) 335.351
CRA001975CRR073297Stem 121.290
CRR073298Stem 215.549
CRR073299Stem 322.446
CRR073300Leaf 115.349
CRR073301Leaf 217.023
CRR073302Leaf 314.644
CRR073303Juvenile bud 125.691
CRR073304Juvenile bud 227.568
CRR073305Juvenile bud 322.975
CRR073306Third green 121.161
CRR073307Third green 218.107
CRR073308Third green 319.298
CRR073309Second white 123.982
CRR073310Second white 217.183
CRR073311Second white 317.731
CRR073312Silver flowering 115.549
CRR073313Silver flowering 211.689
CRR073314Silver flowering 36.062
CRR073315Gold flowering 1116.352
CRR073316Gold flowering 2118.152
CRR073317Gold flowering 3132.659
CRR073318Tawny withering 125.500
CRR073319Tawny withering 216.530
CRR073320Tawny withering 318.646