Gene detail

Detail information of GWHGAAZE007167

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010036349.1	4.93054E-84	PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Eucalyptus grandis]
Swissprot	tr\|Q9M1J2\|RPE5A_ARATH	2E-68	DNA-directed RNA polymerase V subunit 5A
trEMBL	tr\|A0A059A175\|A0A059A175_EUCGR	2E-84	Uncharacterized protein {ECO:0000313\|EMBL:KCW47892.1}
TAIR10	AT3G57080.1	2E-49	Eukaryotic rpb5 RNA polymerase subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	39527440	39540712	-
GWHAAZE00000002	mRNA	39527440	39540712	-
GWHAAZE00000002	exon	39540488	39540712	-
GWHAAZE00000002	exon	39533996	39534046	-
GWHAAZE00000002	exon	39533319	39533406	-
GWHAAZE00000002	exon	39532185	39532301	-
GWHAAZE00000002	exon	39531462	39531514	-
GWHAAZE00000002	exon	39530177	39530290	-
GWHAAZE00000002	exon	39527440	39527565	-
GWHAAZE00000002	CDS	39540488	39540712	-
GWHAAZE00000002	CDS	39533996	39534046	-
GWHAAZE00000002	CDS	39533319	39533406	-
GWHAAZE00000002	CDS	39532185	39532301	-
GWHAAZE00000002	CDS	39531462	39531514	-
GWHAAZE00000002	CDS	39530177	39530290	-
GWHAAZE00000002	CDS	39527440	39527565	-

Transcript Sequence
>GWHTAAZE007175 ATGCCGAAGTGTTTGAGCAGCTACGTGGACCAAGGTAGCGCCGAGAGTCACCGTTACTACCTCTCACGCCGAACCATGCTCGAGTTGCTCAAGGACCGGGGCTATTCCATCCCAGATTCCGAAATCAATATCTCCCTTGAAGAATTTCGTAACATTCACGGCCAAAACCCCGATATCGATCGCCTTCGTATCTCCGCTTCTCTCGAATCAAACCCCTCTAAAAAAAGTCATCAATGCGAGGAAGTAAATGTACCTCCATGGCTCCATTCCTCTAAGGTTCTAGTTGTTTACTGTGGGACTGGCATGGTAAAAGTAAATATCATCCGTAACATCGCAGCTCAGATAATGAACAAGGAAACTTTAAGGTGCTTTGAGGAGGTGGGGTGCGATGGGGAGAACAATGTTGGCAGCAGATGGATTTTGGTGGTAGATGCAGAGTGTAGCGGGGAAATGCCGGTGGTTTGGTGTGATGGGGCTAGAGGAATACATAGTGTAGGAAACTCCTATATACCATCCAAAGGAAATGGGGCTATAATCACCGACTTACTTGTTAACATCACGAAGCATGTGTTGAAGCCAAAGCATCGCGTACTGACTGATGGTGAGAAGAAAAAGCTCTTAAAGAAGTACAACTTGGAAGAAAAACAGCTACCTCGAATGACACTAAACGATGCTATCTCCAAATACTATGGACTGCAGAAAGGGCAGGTGGTGGAAATCAGTTACAATGGTGAAGCTACTGGTTTACATGTCACTTATCGATGTGTTTGGTGA

Network for GWHGAAZE007167

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03871.15	RNA_pol_Rpb5_N	14	114	3.20E-18
PF01191.20	RNA_pol_Rpb5_C	184	256	9.10E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03013	RPB5, POLR2E	RNA polymerase	map03020
K03013	RPB5, POLR2E	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.190
	SRR3591706	second leaf	12.851
	SRR3591707	mature leaf	8.647
	SRR3591708	Shoot apex	34.372
	SRR3591709	Stem	15.921
	SRR3591710	White floral bud	11.579
	SRR3591711	White flower	9.787
	SRR3591712	Green floral bud	13.856
	SRR3591713	Yellow flower	4.906
SRP173429	SRR8316895	Juvenile bud stage	28.717
	SRR8316896	Juvenile bud stage	42.678
	SRR8316897	Juvenile bud stage	18.222
	SRR8316894	Third green stage	14.040
	SRR8316900	Third green stage	30.748
	SRR8316901	Third green stage	31.870
	SRR8316898	Complete white stage	7.285
	SRR8316899	Complete white stage	43.294
	SRR8316903	Complete white stage	14.967
	SRR8316902	Silver flowering stage	6.974
	SRR8316904	Silver flowering stage	8.583
	SRR8316905	Silver flowering stage	3.778
	SRR8316906	Gold flowering stage	11.150
	SRR8316907	Gold flowering stage	11.108
	SRR8316908	Gold flowering stage	12.562
SRP132670	SRR6706286	Control	33.424
	SRR6706287	Light intensity 50%	31.888
	SRR6706288	Light intensity 20%	33.129
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.825
	CNS0095593	Slightly white alabastrum(diploid) 2	36.405
	CNS0095594	Slightly white alabastrum(diploid) 3	35.135
	CNS0095595	Whole white alabastrum(diploid) 2	26.923
	CNS0095596	Whole white alabastrum(diploid) 3	20.710
	CNS0095597	Whole white alabastrum(diploid) 4	20.205
	CNS0095598	Silvery flower (diploied) 1	32.352
	CNS0095599	Silvery flower (diploied) 2	22.383
	CNS0095600	Silvery flower (diploied) 3	14.746
	CNS0095601	Golden flower (diploid) 1	31.740
	CNS0095602	Golden flower (diploid) 2	18.354
	CNS0095603	Golden flower (diploid) 3	17.019
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.785
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.124
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.208
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.810
	CNS0095610	Silvery flower (tetraploid) 1	25.647
	CNS0095611	Silvery flower (tetraploid) 2	15.940
	CNS0095612	Silvery flower (tetraploid) 3	16.570
	CNS0095613	Golden flower (tetraploid) 1	13.222
	CNS0095614	Golden flower (tetraploid) 2	15.598
	CNS0095615	Golden flower (tetraploid) 3	5.798
CRA001975	CRR073297	Stem 1	31.057
	CRR073298	Stem 2	30.013
	CRR073299	Stem 3	22.381
	CRR073300	Leaf 1	27.421
	CRR073301	Leaf 2	23.490
	CRR073302	Leaf 3	20.199
	CRR073303	Juvenile bud 1	10.648
	CRR073304	Juvenile bud 2	8.639
	CRR073305	Juvenile bud 3	7.845
	CRR073306	Third green 1	1.841
	CRR073307	Third green 2	0.941
	CRR073308	Third green 3	1.858
	CRR073309	Second white 1	0.662
	CRR073310	Second white 2	1.667
	CRR073311	Second white 3	1.051
	CRR073312	Silver flowering 1	1.270
	CRR073313	Silver flowering 2	0.690
	CRR073314	Silver flowering 3	0.997
	CRR073315	Gold flowering 1	13.684
	CRR073316	Gold flowering 2	17.228
	CRR073317	Gold flowering 3	9.177
	CRR073318	Tawny withering 1	11.891
	CRR073319	Tawny withering 2	17.409
	CRR073320	Tawny withering 3	17.728