Gene detail

Detail information of GWHGAAZE007185

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004303596.1	1.1761E-170	PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|O24160\|TGA21_TOBAC	8E-163	TGACG-sequence-specific DNA-binding protein TGA-2.1
trEMBL	tr\|A0A067DPL5\|A0A067DPL5_CITSI	4E-170	Uncharacterized protein {ECO:0000313\|EMBL:KDO44924.1}
TAIR10	AT5G06950.4	5E-96	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	39921404	39924955	+
GWHAAZE00000002	mRNA	39921404	39924955	+
GWHAAZE00000002	exon	39921404	39921487	+
GWHAAZE00000002	exon	39921599	39921650	+
GWHAAZE00000002	exon	39922129	39922400	+
GWHAAZE00000002	exon	39923148	39923396	+
GWHAAZE00000002	exon	39924806	39924955	+
GWHAAZE00000002	CDS	39921404	39921487	+
GWHAAZE00000002	CDS	39921599	39921650	+
GWHAAZE00000002	CDS	39922129	39922400	+
GWHAAZE00000002	CDS	39923148	39923396	+
GWHAAZE00000002	CDS	39924806	39924955	+

Transcript Sequence
>GWHTAAZE007193 ATGCAGGCCTATGTACAACAGCTGGAGAGTGGTCGTTTAAAGCTTACCCAACTTGAGCAGGAGCTTCAGCGAGCTCGCCAGCAGGGAATATTAATTTCAAGCTCAGGAGATCAATCCCATGCAACTGGAGGGAATGGGGCCTTGACATTTGATGTAGAATATGCACGATGGATGGAAGAGCAAAGTAAACATATAAATGAGCTGAGGATGGCAGTCAATTCACACGCAAGCGACACTGAACTTCGAACCGTTGTGGACAATGTAATAGTGCACTTTGATGACGTTTTTAGGCTCAAAGGCATTGCAGCAAAGGCTGATGTCTTCCATATCTTGTCGGGAATGTGGAAAACACCTGCTGAGCGTTGTTTTATGTGGATCGGCGGCTTCCGCTCATCTGAACTTCTGAAGCTTCTGTTGAATCAGCTGGAGCCACTAACAGAGCAACAGTCAGCGGACCTTTACAACTTGCAGCAATCATCTCAGCAGGCAGAAGATGCTCTCTCACAGGGGATGGAGGCATTGCAGCAGTCTTTAGCTGAGACATTAGCCACTGGCTCCCCTGGCCCACCCAGTTCATCTGGAAATGTCGCTAATTACATGGGCCAAATGGCGATGGCCATGGGCAAATTGGGTACCCTTGAAGGTTTCCTCCGCCAGGCTGATAATTTGCGGCAACAAACGCTACAGCAATTGCACCGGGTACTGACGACCAGACAATCGGCCCGTGCCCTCCTCGCAATCAACGACTACTTTTCACGGCTTCGAGCTCTCAGCTCCCTCTGGATTGCTCGGCCGAGGGAGCAATGA

Network for GWHGAAZE007185

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14144.7	DOG1	64	139	6.60E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14431	TGA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.437
	SRR3591706	second leaf	16.914
	SRR3591707	mature leaf	23.453
	SRR3591708	Shoot apex	20.478
	SRR3591709	Stem	32.241
	SRR3591710	White floral bud	15.276
	SRR3591711	White flower	20.306
	SRR3591712	Green floral bud	14.287
	SRR3591713	Yellow flower	13.190
SRP173429	SRR8316895	Juvenile bud stage	6.583
	SRR8316896	Juvenile bud stage	10.108
	SRR8316897	Juvenile bud stage	2.789
	SRR8316894	Third green stage	3.167
	SRR8316900	Third green stage	12.582
	SRR8316901	Third green stage	15.223
	SRR8316898	Complete white stage	4.051
	SRR8316899	Complete white stage	29.355
	SRR8316903	Complete white stage	8.200
	SRR8316902	Silver flowering stage	3.474
	SRR8316904	Silver flowering stage	3.579
	SRR8316905	Silver flowering stage	1.806
	SRR8316906	Gold flowering stage	7.080
	SRR8316907	Gold flowering stage	10.474
	SRR8316908	Gold flowering stage	8.986
SRP132670	SRR6706286	Control	17.951
	SRR6706287	Light intensity 50%	15.952
	SRR6706288	Light intensity 20%	17.955
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.035
	CNS0095593	Slightly white alabastrum(diploid) 2	11.478
	CNS0095594	Slightly white alabastrum(diploid) 3	7.458
	CNS0095595	Whole white alabastrum(diploid) 2	6.077
	CNS0095596	Whole white alabastrum(diploid) 3	6.075
	CNS0095597	Whole white alabastrum(diploid) 4	7.174
	CNS0095598	Silvery flower (diploied) 1	15.483
	CNS0095599	Silvery flower (diploied) 2	13.785
	CNS0095600	Silvery flower (diploied) 3	10.753
	CNS0095601	Golden flower (diploid) 1	22.513
	CNS0095602	Golden flower (diploid) 2	13.927
	CNS0095603	Golden flower (diploid) 3	13.379
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.855
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.802
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.990
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.235
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.136
	CNS0095610	Silvery flower (tetraploid) 1	13.270
	CNS0095611	Silvery flower (tetraploid) 2	15.599
	CNS0095612	Silvery flower (tetraploid) 3	11.324
	CNS0095613	Golden flower (tetraploid) 1	10.143
	CNS0095614	Golden flower (tetraploid) 2	17.399
	CNS0095615	Golden flower (tetraploid) 3	8.157
CRA001975	CRR073297	Stem 1	10.790
	CRR073298	Stem 2	10.622
	CRR073299	Stem 3	6.866
	CRR073300	Leaf 1	21.540
	CRR073301	Leaf 2	23.299
	CRR073302	Leaf 3	15.551
	CRR073303	Juvenile bud 1	16.749
	CRR073304	Juvenile bud 2	9.660
	CRR073305	Juvenile bud 3	26.004
	CRR073306	Third green 1	4.492
	CRR073307	Third green 2	2.437
	CRR073308	Third green 3	4.136
	CRR073309	Second white 1	7.929
	CRR073310	Second white 2	6.948
	CRR073311	Second white 3	9.765
	CRR073312	Silver flowering 1	6.048
	CRR073313	Silver flowering 2	5.527
	CRR073314	Silver flowering 3	5.883
	CRR073315	Gold flowering 1	21.578
	CRR073316	Gold flowering 2	25.247
	CRR073317	Gold flowering 3	19.224
	CRR073318	Tawny withering 1	39.128
	CRR073319	Tawny withering 2	41.703
	CRR073320	Tawny withering 3	33.856