Gene detail

Detail information of GWHGAAZE007188

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792698.1	1.00769E-80	PREDICTED: F-box protein At2g05970 isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q3EBZ2\|SKI23_ARATH	7E-14	F-box protein SKIP23
trEMBL	tr\|A0A068UMQ5\|A0A068UMQ5_COFCA	2E-68	Coffea canephora DH200=94 genomic scaffold, scaffold_39 {ECO:0000313\|EMBL:CDP09582.1}
TAIR10	AT5G55150.1	4E-14	Protein of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40008032	40009111	-
GWHAAZE00000002	mRNA	40008032	40009111	-
GWHAAZE00000002	exon	40008032	40009111	-
GWHAAZE00000002	CDS	40008032	40009111	-

Transcript Sequence
>GWHTAAZE007196 ATGATGGATTGGTCCCAACTTCCTTATGACCTCATTGCATCAATTGCTAACAAGTTACATGCAATTGAAGATTTTGTTTCATTTTCTGCCGTTTGTCGCTCGTGGCGGTTCGTTTATCGAAACAACCACTGGACCCCAACTCGTAGAGTCCCTTGGTTGATGGTGAATGAGAACCACGGCAGTGAAGTATGTACAAGACGTTTTATCAGTATGGGGAAGAACAAGGCTTACAAATTACCACTACCTATGGCTCACGGTCGTCGTTGTTGGGGGTCTACTCATGGGTGGATCGTGACCGTTGATCAAAATCTTATAATTAGCCTTCTGAATCCTGTCTCTCAAGTTTGCTTTGATCTTCCACCCCATTCTACCTTAGAGAACCAAGTTCAGAGTCCTCAGCCCATTGTTGATTGGTTTAGTTTCATACTCAAGGCTGCTGTATTCAAGATAAGAGACGGGTTTGTGACCATGATAATCTACGGTCAGGATTATAGGTTAGCTTTTCATCGGCATCGTGAAGGTAGTTCATGGCTTACTGTGCCATCGAACCACATCCATTTCATTGATGTCGTGTGCTTCGGGAATCAAGTTTTTGCGCTTTCTGTAACGGGGGAACTTTATCTTGTTCAGATTGACGGTCCTGATCCTCCAAGGATTATATTCATATCTTCATCACTGCCAGATCAAAACGGTTGGCTGCAAAAGCACTTGGTGCACTCATCGGGCCAACTTCTTTTGATATTTCACAATCCTTGTATGAGCTCTGTGCTGAAATTCAAGGTGTATAGGTTTGATTTCAACGCTAACACGTGGAAGGTATTGCAGAGCTTGGGAGAATGCACGTTGTTTTTAGATGATTCTCATTTTTTTTCAATTTCGGCTGGCGATGATTTCAAATCCAATAGCATTTACTTTGCGATGGATAGTTTGCAATGGTTCTGGGGAGTGAAAGATGAGTGGGATTATTGTGGCGTTTATCATATGGAAGATGACACCATAGAAAGGTTCTCGTTGCCCAATATGGGTGAAGTTTTTCCACATTATATTTGCCCGACATGGCTGATCCCTACTTTATCCTAG

Network for GWHGAAZE007188

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	2	36	0.001
PF03478.19	DUF295	275	328	7.60E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.642
	SRR3591706	second leaf	18.601
	SRR3591707	mature leaf	12.252
	SRR3591708	Shoot apex	43.377
	SRR3591709	Stem	55.819
	SRR3591710	White floral bud	32.290
	SRR3591711	White flower	17.151
	SRR3591712	Green floral bud	32.791
	SRR3591713	Yellow flower	5.172
SRP173429	SRR8316895	Juvenile bud stage	24.836
	SRR8316896	Juvenile bud stage	30.308
	SRR8316897	Juvenile bud stage	15.377
	SRR8316894	Third green stage	13.275
	SRR8316900	Third green stage	42.829
	SRR8316901	Third green stage	43.100
	SRR8316898	Complete white stage	24.149
	SRR8316899	Complete white stage	102.474
	SRR8316903	Complete white stage	26.960
	SRR8316902	Silver flowering stage	8.014
	SRR8316904	Silver flowering stage	11.819
	SRR8316905	Silver flowering stage	6.623
	SRR8316906	Gold flowering stage	13.321
	SRR8316907	Gold flowering stage	10.573
	SRR8316908	Gold flowering stage	12.868
SRP132670	SRR6706286	Control	59.052
	SRR6706287	Light intensity 50%	57.596
	SRR6706288	Light intensity 20%	55.063
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.521
	CNS0095593	Slightly white alabastrum(diploid) 2	42.424
	CNS0095594	Slightly white alabastrum(diploid) 3	29.415
	CNS0095595	Whole white alabastrum(diploid) 2	34.586
	CNS0095596	Whole white alabastrum(diploid) 3	38.841
	CNS0095597	Whole white alabastrum(diploid) 4	34.014
	CNS0095598	Silvery flower (diploied) 1	11.422
	CNS0095599	Silvery flower (diploied) 2	15.141
	CNS0095600	Silvery flower (diploied) 3	16.054
	CNS0095601	Golden flower (diploid) 1	10.136
	CNS0095602	Golden flower (diploid) 2	14.084
	CNS0095603	Golden flower (diploid) 3	17.213
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.696
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.902
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.116
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.192
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.649
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.998
	CNS0095610	Silvery flower (tetraploid) 1	17.583
	CNS0095611	Silvery flower (tetraploid) 2	17.576
	CNS0095612	Silvery flower (tetraploid) 3	36.480
	CNS0095613	Golden flower (tetraploid) 1	6.672
	CNS0095614	Golden flower (tetraploid) 2	10.061
	CNS0095615	Golden flower (tetraploid) 3	12.318
CRA001975	CRR073297	Stem 1	59.078
	CRR073298	Stem 2	45.126
	CRR073299	Stem 3	56.026
	CRR073300	Leaf 1	71.725
	CRR073301	Leaf 2	62.356
	CRR073302	Leaf 3	69.238
	CRR073303	Juvenile bud 1	79.292
	CRR073304	Juvenile bud 2	84.866
	CRR073305	Juvenile bud 3	77.718
	CRR073306	Third green 1	32.214
	CRR073307	Third green 2	33.510
	CRR073308	Third green 3	28.903
	CRR073309	Second white 1	14.174
	CRR073310	Second white 2	13.520
	CRR073311	Second white 3	8.229
	CRR073312	Silver flowering 1	6.655
	CRR073313	Silver flowering 2	6.708
	CRR073314	Silver flowering 3	6.493
	CRR073315	Gold flowering 1	17.043
	CRR073316	Gold flowering 2	17.110
	CRR073317	Gold flowering 3	23.784
	CRR073318	Tawny withering 1	60.435
	CRR073319	Tawny withering 2	47.968
	CRR073320	Tawny withering 3	71.142