Gene detail

Detail information of GWHGAAZE007190

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792698.1	7.94677E-42	PREDICTED: F-box protein At2g05970 isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q3EBZ2\|SKI23_ARATH	0.000002	F-box protein SKIP23
trEMBL	tr\|A0A068UMQ5\|A0A068UMQ5_COFCA	7E-33	Coffea canephora DH200=94 genomic scaffold, scaffold_39 {ECO:0000313\|EMBL:CDP09582.1}
TAIR10	AT2G17030.1	0.000005	F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40047104	40061365	-
GWHAAZE00000002	mRNA	40047104	40061365	-
GWHAAZE00000002	exon	40061168	40061365	-
GWHAAZE00000002	exon	40058703	40058931	-
GWHAAZE00000002	exon	40058180	40058547	-
GWHAAZE00000002	exon	40048489	40048722	-
GWHAAZE00000002	exon	40048135	40048228	-
GWHAAZE00000002	exon	40047684	40047850	-
GWHAAZE00000002	exon	40047411	40047483	-
GWHAAZE00000002	exon	40047104	40047204	-
GWHAAZE00000002	CDS	40061168	40061365	-
GWHAAZE00000002	CDS	40058703	40058931	-
GWHAAZE00000002	CDS	40058180	40058547	-
GWHAAZE00000002	CDS	40048489	40048722	-
GWHAAZE00000002	CDS	40048135	40048228	-
GWHAAZE00000002	CDS	40047684	40047850	-
GWHAAZE00000002	CDS	40047411	40047483	-
GWHAAZE00000002	CDS	40047104	40047204	-

Transcript Sequence
>GWHTAAZE007198 ATGATTTATAGGCGTTGTTTTAGAGAGCTACAGGAGAAAGTGCTTGTCGAGGTAAACAAAGATGAAGGTGAAGAAGGTCTTTATGATTGTGGAGGAATTGAAGAGATCATTAATTACGCATTTTTCTCAGTTATCTCCGTCATGTCATCGACGTCGTTGGCATCTCTGGCCTGCCGCCGGCCCAACCGTTACCTTCAGTATACGTCCATGGTGGATTGGTCCAATCTTCCGTATGATCTCATTGCATTGATTGCAAACAAATTGTATGCAGTTGAAGATTTTCTTGCATTTTCTGCCGTTTGTAGTTCATGGAGATTAGTTTATCTAAAGAAAAACTGGAACCCGAGTGCTACAAGCCCATGGCTGATTCTAGATGTGAACCACAACAGTGAAGCACTCATAAGATGCAATTTAAGTTTATGTAGGAAGAACCAAATTCATACCAAGATTGATTGGTTCAGTGTCATATATAAGGCCAATGTACTCAAGATTAAAGATGGATTTTTGACGGTGGTAACCTTAGGTATGCATCACAATTTGTATTTTGCTAGAGCAGGAGATAGTGCATGGACTATTGTTCAACTTTCGTATCCTAATATTTTAGTTAGTATTATGTGCTTTAAGGATCAGATTTATGCAGCATCTGCTTATGGGGCACTTCTTCTTATTGAGATTGATGGACCCAATCCCCCTGAGGCTACACTAATAACATTAACACCAAACCATGAGAAGGGTTGGAAGCATATACATTTGGTGGAATCATCAGGGGATCTTTTGATGATATTTCAGCTATGCCACATGACAATGGTGGATTGGTCCCAACTACCATATGATATCGTTGCACTAATTGCCAACAAGTTGCACACAATTGAAGATTTCATTTCGTTTTCTGCTGTCTGTCGCTCATGGCAGTTCATTTATCGAAACAAAGACTGGACCCCAACTCGTAGAGTCCCTTTGTTGATGGTGGATGAGAACCACAGCAGTGATGTATGTGCAAGACGTTTTATCAGTATGTGGAAGAATAAGGATTATAGGTTAGCTTTTTATCGACATCATGAAGGTAGTGCATGGCTTCCAGTGCCAGCTAACTACATCCGTTTCATTGATGTCGTGTGCTTCGGCTTTTTCCTTTTGGCTGGAGATGATTTCAAATCCAACAGCATTTACTTTGCAGTAGAAAATTTGAGATGGTTGTTGGGAATGGAAGAGAATTATGAGTGGGAATATTGTGGTGTTTATCATATGGAAGATGAGACCACAGAAACGTTCTTGTTAAAGATGTCCTATGAGCAGAATCTTGAGGGGTCCTTGGAGGGTGATATTTCGCTATGCGAGTCAGCAAAAGACACTAAAATTCAAGGACTTGGAACTAGAATGCATCAGTCTGCCCTTCTTTTCCTCCTCCGCCTTATGACACCAATTGTAAACCCTACCTTTTTTTTTCCTGACACTGTAAACTGA

Network for GWHGAAZE007190

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.238
	SRR3591706	second leaf	0.995
	SRR3591707	mature leaf	1.733
	SRR3591708	Shoot apex	2.624
	SRR3591709	Stem	2.853
	SRR3591710	White floral bud	2.107
	SRR3591711	White flower	2.302
	SRR3591712	Green floral bud	3.560
	SRR3591713	Yellow flower	2.235
SRP173429	SRR8316895	Juvenile bud stage	1.804
	SRR8316896	Juvenile bud stage	2.967
	SRR8316897	Juvenile bud stage	1.177
	SRR8316894	Third green stage	1.056
	SRR8316900	Third green stage	4.947
	SRR8316901	Third green stage	3.810
	SRR8316898	Complete white stage	2.027
	SRR8316899	Complete white stage	6.295
	SRR8316903	Complete white stage	2.987
	SRR8316902	Silver flowering stage	1.327
	SRR8316904	Silver flowering stage	2.381
	SRR8316905	Silver flowering stage	1.122
	SRR8316906	Gold flowering stage	4.059
	SRR8316907	Gold flowering stage	3.493
	SRR8316908	Gold flowering stage	3.090
SRP132670	SRR6706286	Control	3.351
	SRR6706287	Light intensity 50%	2.938
	SRR6706288	Light intensity 20%	3.476
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.339
	CNS0095593	Slightly white alabastrum(diploid) 2	3.418
	CNS0095594	Slightly white alabastrum(diploid) 3	3.599
	CNS0095595	Whole white alabastrum(diploid) 2	3.112
	CNS0095596	Whole white alabastrum(diploid) 3	3.252
	CNS0095597	Whole white alabastrum(diploid) 4	3.890
	CNS0095598	Silvery flower (diploied) 1	2.538
	CNS0095599	Silvery flower (diploied) 2	3.288
	CNS0095600	Silvery flower (diploied) 3	3.983
	CNS0095601	Golden flower (diploid) 1	3.176
	CNS0095602	Golden flower (diploid) 2	4.268
	CNS0095603	Golden flower (diploid) 3	4.128
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.340
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.848
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.404
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.705
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.621
	CNS0095610	Silvery flower (tetraploid) 1	2.555
	CNS0095611	Silvery flower (tetraploid) 2	3.956
	CNS0095612	Silvery flower (tetraploid) 3	2.692
	CNS0095613	Golden flower (tetraploid) 1	0.655
	CNS0095614	Golden flower (tetraploid) 2	2.338
	CNS0095615	Golden flower (tetraploid) 3	1.825
CRA001975	CRR073297	Stem 1	2.925
	CRR073298	Stem 2	3.334
	CRR073299	Stem 3	3.608
	CRR073300	Leaf 1	3.328
	CRR073301	Leaf 2	3.328
	CRR073302	Leaf 3	5.926
	CRR073303	Juvenile bud 1	3.929
	CRR073304	Juvenile bud 2	3.428
	CRR073305	Juvenile bud 3	3.089
	CRR073306	Third green 1	1.425
	CRR073307	Third green 2	1.053
	CRR073308	Third green 3	2.429
	CRR073309	Second white 1	2.049
	CRR073310	Second white 2	0.958
	CRR073311	Second white 3	1.310
	CRR073312	Silver flowering 1	1.552
	CRR073313	Silver flowering 2	1.581
	CRR073314	Silver flowering 3	0.803
	CRR073315	Gold flowering 1	1.824
	CRR073316	Gold flowering 2	2.677
	CRR073317	Gold flowering 3	2.569
	CRR073318	Tawny withering 1	3.974
	CRR073319	Tawny withering 2	2.009
	CRR073320	Tawny withering 3	3.120