Gene detail

Detail information of GWHGAAZE007192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009618519.1	1.85E-158	PREDICTED: F-box protein At2g26850-like isoform X2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q6NLB1\|FB118_ARATH	6E-136	F-box protein At2g26850
trEMBL	tr\|A0A068UMA9\|A0A068UMA9_COFCA	5E-154	Coffea canephora DH200=94 genomic scaffold, scaffold_39 {ECO:0000313\|EMBL:CDP09596.1}
TAIR10	AT2G26850.1	2E-110	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	40174405	40177931	+
GWHAAZE00000002	mRNA	40174405	40177931	+
GWHAAZE00000002	exon	40174405	40174932	+
GWHAAZE00000002	exon	40175807	40175886	+
GWHAAZE00000002	exon	40176024	40176196	+
GWHAAZE00000002	exon	40176439	40176513	+
GWHAAZE00000002	exon	40177410	40177931	+
GWHAAZE00000002	CDS	40174405	40174932	+
GWHAAZE00000002	CDS	40175807	40175886	+
GWHAAZE00000002	CDS	40176024	40176196	+
GWHAAZE00000002	CDS	40176439	40176513	+
GWHAAZE00000002	CDS	40177410	40177597	+
GWHAAZE00000002	three_prime_UTR	40177598	40177931	+

Transcript Sequence
>GWHTAAZE007200 ATGAAAACTGTTTCCTTTTCTTGGTTTCTTGGAAAACTCTCTCTGTTTTTCTCTCAAGTTCCCCTCCAATCCAAGAAAATCCCAACCCATCAAAAAACAGACCAAGTAACTGAAAAGAAAGGTGAAATTTCCCTACTTGATTTGCCAGATTTGCCCCTGGAGTGCATTCTTGAGAGGCTATTGCCAGCTGAGTTAACTACCATGGCAAGTGTGTGTAGTACCTTGAGGGAGAGGTGTACAAGTGACCATTTGTGGGAGAGACACTTGAGGGCAAAATGGGGAAAATTGATTGGTGATGCTGCTTATAAAGAGTGGAAATGTCACATTGGATCAAGCAAGAGAAAAACCCAATTAGATTCTTTGAAAAAAAAGGGGTATTTTGGGAATTTTCTGTGGAATAGATTGAAGCAGAGGGAGAGTGGTAGTGTGAAGAAGAGGAGTTGTTTGGCTGTTGATTCAATCATGGCTTGGTATTTGTCTATTGAGAGTGGCAAGTTTTGGTTTCCAGCTCAAGTCTATAATAGAGAGAATGGACATGTTGGGTTTATGCTGTCATGTTATGATGCTGAACTAAGATATGACTCCACCACAGACACATTTGTAGCAAGGTACTCGGCACAAGGGCGCCCCACGACGGAGGATAATATAGAGTGGAATCGACTAAGAGCACCCATAGTCGATATGTCTCCGCATGTTCTTCATGCCTCGAATTGCTTAAACGATTTAAACCCGGGAGATCACATTGAGATCCAGTGGAGAAGAAACAAAGAATTCCCTTACGGTTGGTGGTATGGAGTTGTGGGTCACTTGGAATCTTGCCAGGGGAACAAACTTTACTGCCAATGTCACAGTAGTGACACTATAATACTAGAATTCAAGCAATATAGCCCCGGTTCGCGATGGAGAGAAGTGATGATAAATAGGAAAGACCATCATGAAGTAGGCAACGAAGATGACGGGTTTTATGGTGGAATCCGAAAGATTTACAATGAAGATCAAATATCGATATGGAAGCGCCTCTGGCCAGCCCACGCCGTTGAGTAAGCTAGAGCTTTTATCGCGAAGATTCGTTTTTCTAACCGTAAATAGAATGTTGTTAGGCACACAAAGTAGCTTGTAGGAGAAAATAACCAAGGCATCAATTTTTGTTTAGTGGATGCTTATATAGGCTTTAAATGTATGGTAATAAACTGAGATCAGTCAATTAATGTACAAAAAAAAAATGTAACTAGTTAATGATGAAAAATTGTAATTAGTTTATGATGAGTACTACAAAGTTTCTATTTGGCACAAGTTTACAATGTAGAGTGAAAAACCAGTTTTTCTCCTTGGTTTGTCACTTTTGGATGAAGCATCAAGATTTACCAACAAAATTGTG

Network for GWHGAAZE007192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	44	89	1.30E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.031
	SRR3591706	second leaf	9.765
	SRR3591707	mature leaf	3.730
	SRR3591708	Shoot apex	17.231
	SRR3591709	Stem	44.563
	SRR3591710	White floral bud	13.282
	SRR3591711	White flower	17.325
	SRR3591712	Green floral bud	10.000
	SRR3591713	Yellow flower	10.199
SRP173429	SRR8316895	Juvenile bud stage	4.226
	SRR8316896	Juvenile bud stage	14.304
	SRR8316897	Juvenile bud stage	2.469
	SRR8316894	Third green stage	4.953
	SRR8316900	Third green stage	11.696
	SRR8316901	Third green stage	10.911
	SRR8316898	Complete white stage	8.385
	SRR8316899	Complete white stage	9.274
	SRR8316903	Complete white stage	17.104
	SRR8316902	Silver flowering stage	8.797
	SRR8316904	Silver flowering stage	9.585
	SRR8316905	Silver flowering stage	1.256
	SRR8316906	Gold flowering stage	3.572
	SRR8316907	Gold flowering stage	6.960
	SRR8316908	Gold flowering stage	8.299
SRP132670	SRR6706286	Control	5.480
	SRR6706287	Light intensity 50%	4.407
	SRR6706288	Light intensity 20%	4.695
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.677
	CNS0095593	Slightly white alabastrum(diploid) 2	10.724
	CNS0095594	Slightly white alabastrum(diploid) 3	9.517
	CNS0095595	Whole white alabastrum(diploid) 2	4.532
	CNS0095596	Whole white alabastrum(diploid) 3	3.126
	CNS0095597	Whole white alabastrum(diploid) 4	4.571
	CNS0095598	Silvery flower (diploied) 1	8.289
	CNS0095599	Silvery flower (diploied) 2	5.616
	CNS0095600	Silvery flower (diploied) 3	4.305
	CNS0095601	Golden flower (diploid) 1	4.482
	CNS0095602	Golden flower (diploid) 2	5.365
	CNS0095603	Golden flower (diploid) 3	5.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.411
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.499
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.171
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.295
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.286
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.178
	CNS0095610	Silvery flower (tetraploid) 1	7.919
	CNS0095611	Silvery flower (tetraploid) 2	5.776
	CNS0095612	Silvery flower (tetraploid) 3	5.038
	CNS0095613	Golden flower (tetraploid) 1	6.646
	CNS0095614	Golden flower (tetraploid) 2	10.079
	CNS0095615	Golden flower (tetraploid) 3	3.926
CRA001975	CRR073297	Stem 1	14.781
	CRR073298	Stem 2	14.733
	CRR073299	Stem 3	11.651
	CRR073300	Leaf 1	14.826
	CRR073301	Leaf 2	15.241
	CRR073302	Leaf 3	9.890
	CRR073303	Juvenile bud 1	7.254
	CRR073304	Juvenile bud 2	4.381
	CRR073305	Juvenile bud 3	9.615
	CRR073306	Third green 1	15.535
	CRR073307	Third green 2	14.470
	CRR073308	Third green 3	13.305
	CRR073309	Second white 1	9.740
	CRR073310	Second white 2	8.837
	CRR073311	Second white 3	8.117
	CRR073312	Silver flowering 1	12.834
	CRR073313	Silver flowering 2	12.610
	CRR073314	Silver flowering 3	13.478
	CRR073315	Gold flowering 1	1.645
	CRR073316	Gold flowering 2	2.832
	CRR073317	Gold flowering 3	3.279
	CRR073318	Tawny withering 1	16.034
	CRR073319	Tawny withering 2	6.863
	CRR073320	Tawny withering 3	18.213