Detail information of GWHGAAZE007211


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI32808.31.0135E-109unnamed protein product [Vitis vinifera]
Swissprottr|Q43697|TBB5_MAIZE6E-111Tubulin beta-5 chain
trEMBLtr|M0Y723|M0Y723_HORVD6E-110Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_66337.1}
TAIR10AT5G12250.11E-79beta-6 tubulin

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4057822440579047-
GWHAAZE00000002mRNA4057822440579047-
GWHAAZE00000002exon4057865440579047-
GWHAAZE00000002exon4057822440578297-
GWHAAZE00000002CDS4057865440579047-
GWHAAZE00000002CDS4057822440578297-
Transcript Sequence

Network for GWHGAAZE007211

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.26Tubulin31551.40E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07375TUBB Phagosome map04145
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0005200molecular_functionstructural constituent of cytoskeleton
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf312.046
SRR3591706second leaf75.527
SRR3591707mature leaf17.215
SRR3591708Shoot apex115.546
SRR3591709Stem142.682
SRR3591710White floral bud102.519
SRR3591711White flower37.987
SRR3591712Green floral bud255.431
SRR3591713Yellow flower13.994
SRP173429 SRR8316895Juvenile bud stage 89.729
SRR8316896Juvenile bud stage 99.382
SRR8316897Juvenile bud stage 49.042
SRR8316894Third green stage 51.799
SRR8316900Third green stage 167.416
SRR8316901Third green stage 137.034
SRR8316898Complete white stage 32.683
SRR8316899Complete white stage 162.759
SRR8316903Complete white stage 41.641
SRR8316902Silver flowering stage2.986
SRR8316904Silver flowering stage9.468
SRR8316905Silver flowering stage1.955
SRR8316906Gold flowering stage 5.230
SRR8316907Gold flowering stage 5.395
SRR8316908Gold flowering stage 8.256
SRP132670SRR6706286Control211.903
SRR6706287Light intensity 50%239.613
SRR6706288Light intensity 20%254.616
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1120.796
CNS0095593Slightly white alabastrum(diploid) 2135.710
CNS0095594Slightly white alabastrum(diploid) 390.146
CNS0095595Whole white alabastrum(diploid) 291.099
CNS0095596Whole white alabastrum(diploid) 3136.593
CNS0095597Whole white alabastrum(diploid) 473.888
CNS0095598Silvery flower (diploied) 130.487
CNS0095599Silvery flower (diploied) 249.219
CNS0095600Silvery flower (diploied) 338.512
CNS0095601Golden flower (diploid) 122.930
CNS0095602Golden flower (diploid) 229.805
CNS0095603Golden flower (diploid) 329.960
CNS0095604Slightly white alabastrum(tetraploid) 1191.335
CNS0095605Slightly white alabastrum(tetraploid) 2143.195
CNS0095606Slightly white alabastrum(tetraploid) 3464.930
CNS0095607Whole white alabastrum(tetraploid) 168.574
CNS0095608Whole white alabastrum(tetraploid) 256.465
CNS0095609Whole white alabastrum(tetraploid) 3340.734
CNS0095610Silvery flower (tetraploid) 166.164
CNS0095611Silvery flower (tetraploid) 263.053
CNS0095612Silvery flower (tetraploid) 353.437
CNS0095613Golden flower (tetraploid) 19.320
CNS0095614Golden flower (tetraploid) 273.317
CNS0095615Golden flower (tetraploid) 318.160
CRA001975CRR073297Stem 1255.494
CRR073298Stem 2263.485
CRR073299Stem 3385.811
CRR073300Leaf 1375.581
CRR073301Leaf 2314.020
CRR073302Leaf 3484.724
CRR073303Juvenile bud 1490.939
CRR073304Juvenile bud 2541.024
CRR073305Juvenile bud 3521.106
CRR073306Third green 152.102
CRR073307Third green 286.961
CRR073308Third green 395.181
CRR073309Second white 111.844
CRR073310Second white 27.150
CRR073311Second white 33.233
CRR073312Silver flowering 11.598
CRR073313Silver flowering 23.395
CRR073314Silver flowering 31.757
CRR073315Gold flowering 155.252
CRR073316Gold flowering 261.332
CRR073317Gold flowering 378.549
CRR073318Tawny withering 1229.922
CRR073319Tawny withering 2117.527
CRR073320Tawny withering 3346.547