Detail information of GWHGAAZE007219


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010036386.14.3095E-103PREDICTED: transcription factor PCL1-like [Eucalyptus grandis]
Swissprottr|Q9SNB4|PCL1_ARATH2E-46Transcription factor LUX
trEMBLtr|A0A059A3P3|A0A059A3P3_EUCGR2E-103Uncharacterized protein {ECO:0000313|EMBL:KCW47935.1}
TAIR10AT3G10760.14E-51Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4075680640758368+
GWHAAZE00000002mRNA4075680640758368+
GWHAAZE00000002exon4075680640757081+
GWHAAZE00000002exon4075791340758368+
GWHAAZE00000002CDS4075680640757081+
GWHAAZE00000002CDS4075791340758368+
Transcript Sequence

Network for GWHGAAZE007219

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding47951.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGARP-G2-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.328
SRR3591706second leaf2.352
SRR3591707mature leaf2.084
SRR3591708Shoot apex3.303
SRR3591709Stem11.612
SRR3591710White floral bud7.506
SRR3591711White flower5.565
SRR3591712Green floral bud9.862
SRR3591713Yellow flower2.294
SRP173429 SRR8316895Juvenile bud stage 8.447
SRR8316896Juvenile bud stage 8.277
SRR8316897Juvenile bud stage 4.911
SRR8316894Third green stage 3.664
SRR8316900Third green stage 12.759
SRR8316901Third green stage 11.521
SRR8316898Complete white stage 3.749
SRR8316899Complete white stage 19.279
SRR8316903Complete white stage 6.174
SRR8316902Silver flowering stage3.687
SRR8316904Silver flowering stage3.558
SRR8316905Silver flowering stage2.171
SRR8316906Gold flowering stage 3.140
SRR8316907Gold flowering stage 4.360
SRR8316908Gold flowering stage 6.497
SRP132670SRR6706286Control8.587
SRR6706287Light intensity 50%9.377
SRR6706288Light intensity 20%10.899
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.664
CNS0095593Slightly white alabastrum(diploid) 215.808
CNS0095594Slightly white alabastrum(diploid) 313.085
CNS0095595Whole white alabastrum(diploid) 212.530
CNS0095596Whole white alabastrum(diploid) 310.008
CNS0095597Whole white alabastrum(diploid) 416.143
CNS0095598Silvery flower (diploied) 114.003
CNS0095599Silvery flower (diploied) 26.747
CNS0095600Silvery flower (diploied) 310.207
CNS0095601Golden flower (diploid) 16.363
CNS0095602Golden flower (diploid) 28.789
CNS0095603Golden flower (diploid) 38.196
CNS0095604Slightly white alabastrum(tetraploid) 14.928
CNS0095605Slightly white alabastrum(tetraploid) 24.419
CNS0095606Slightly white alabastrum(tetraploid) 37.052
CNS0095607Whole white alabastrum(tetraploid) 14.327
CNS0095608Whole white alabastrum(tetraploid) 24.159
CNS0095609Whole white alabastrum(tetraploid) 36.721
CNS0095610Silvery flower (tetraploid) 14.549
CNS0095611Silvery flower (tetraploid) 25.309
CNS0095612Silvery flower (tetraploid) 311.376
CNS0095613Golden flower (tetraploid) 14.682
CNS0095614Golden flower (tetraploid) 25.000
CNS0095615Golden flower (tetraploid) 33.822
CRA001975CRR073297Stem 17.779
CRR073298Stem 27.135
CRR073299Stem 311.500
CRR073300Leaf 15.839
CRR073301Leaf 29.781
CRR073302Leaf 38.774
CRR073303Juvenile bud 14.808
CRR073304Juvenile bud 24.404
CRR073305Juvenile bud 39.532
CRR073306Third green 11.918
CRR073307Third green 23.285
CRR073308Third green 32.739
CRR073309Second white 11.814
CRR073310Second white 20.606
CRR073311Second white 31.172
CRR073312Silver flowering 11.321
CRR073313Silver flowering 20.678
CRR073314Silver flowering 32.697
CRR073315Gold flowering 12.551
CRR073316Gold flowering 23.355
CRR073317Gold flowering 34.845
CRR073318Tawny withering 17.032
CRR073319Tawny withering 28.534
CRR073320Tawny withering 35.197