Gene detail

Detail information of GWHGAAZE007244

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008244084.1	PREDICTED: 4-alpha-glucanotransferase DPE2 [Prunus mume]
Swissprot	tr\|Q8RXD9\|DPE2_ARATH	4-alpha-glucanotransferase DPE2
trEMBL	tr\|A0A067EU47\|A0A067EU47_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO57420.1}
TAIR10	AT2G40840.1	disproportionating enzyme 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	41158497	41173216	-
GWHAAZE00000002	mRNA	41158497	41173216	-
GWHAAZE00000002	exon	41158497	41158732	-
GWHAAZE00000002	exon	41159883	41160057	-
GWHAAZE00000002	exon	41160437	41160634	-
GWHAAZE00000002	exon	41161208	41161306	-
GWHAAZE00000002	exon	41161408	41161567	-
GWHAAZE00000002	exon	41162482	41162579	-
GWHAAZE00000002	exon	41162704	41162820	-
GWHAAZE00000002	exon	41164545	41164616	-
GWHAAZE00000002	exon	41164770	41164844	-
GWHAAZE00000002	exon	41165272	41165397	-
GWHAAZE00000002	exon	41166156	41166398	-
GWHAAZE00000002	exon	41166502	41166605	-
GWHAAZE00000002	exon	41168267	41168305	-
GWHAAZE00000002	exon	41168375	41168544	-
GWHAAZE00000002	exon	41169393	41169589	-
GWHAAZE00000002	exon	41169668	41169802	-
GWHAAZE00000002	exon	41170318	41170467	-
GWHAAZE00000002	exon	41170565	41170620	-
GWHAAZE00000002	exon	41170715	41170832	-
GWHAAZE00000002	exon	41172863	41173216	-
GWHAAZE00000002	CDS	41172863	41173216	-
GWHAAZE00000002	CDS	41170715	41170832	-
GWHAAZE00000002	CDS	41170565	41170620	-
GWHAAZE00000002	CDS	41170318	41170467	-
GWHAAZE00000002	CDS	41169668	41169802	-
GWHAAZE00000002	CDS	41169393	41169589	-
GWHAAZE00000002	CDS	41168375	41168544	-
GWHAAZE00000002	CDS	41168267	41168305	-
GWHAAZE00000002	CDS	41166502	41166605	-
GWHAAZE00000002	CDS	41166156	41166398	-
GWHAAZE00000002	CDS	41165272	41165397	-
GWHAAZE00000002	CDS	41164770	41164844	-
GWHAAZE00000002	CDS	41164545	41164616	-
GWHAAZE00000002	CDS	41162704	41162820	-
GWHAAZE00000002	CDS	41162482	41162579	-
GWHAAZE00000002	CDS	41161408	41161567	-
GWHAAZE00000002	CDS	41161208	41161306	-
GWHAAZE00000002	CDS	41160437	41160634	-
GWHAAZE00000002	CDS	41159883	41160057	-
GWHAAZE00000002	CDS	41158497	41158732	-

Transcript Sequence
>GWHTAAZE007252 ATGGTGAATTTGGGGTTGTTTTCTGAGGGAAAATCTCTGAAATCTGTAAATGTGAGCTTCAGAATACCCTATTATACTCATTGGGGCCAGAGTCTTTTGGTGTGTGGTTCGGAACTGTTGCTAGGTTCATGGAATGTGAAGAAAGGTCTTTTGTTGAGCCCTTTTCATCAAGGGGATGAGCTCATATGGGGTGGAAGTTTGACCGTTCCAGCAGGTTTTGGATGCGAATACAGCTATTATGTGGTGGATGATGAAAGAAATGTTCTTAGATGGGAGGCTGGAAAGAAGAGAAAGCTTTTGCTGCCTGACGAGGTTCAGGATAGAGAAGTTGTGGAGCTTCATGACCTTTGGCAGGCTGGTTCTGATAGTCTCCCTTTCAAAAGTGGTTTCAAAAATGTCATATTTCGCAGAAGCTCGAGTTTAGATATTGAGATACCCCTTGGGTTTATTCACAATAAGTTGGACCATGAAGATTCAATCATCGTTCAATTCAAAATTTGTTGCCCAAATATAGAAGCAGCAGCAGCAATTTATGTGATTGGTAGCTCTTTGAAGCTAGGGAGATGGAAGATTCAAGATGGACTTAAACTTAACTATGCTGGTGACTCAACTTGGCAGGCTGATTGTGTGGTGCAAAAGGATGAGTTTCCTATAAAATATCCTTTTGCATGTTGCTATTTTTTCACATACAAGTACAGTAAATATGGCAAGGCAGAAAACATTGCCTTAGAAACTGGCCCGAACAGGGAGCTCTTTGTTGACTTTTCAGCTAGTCAACCAAAATACATCATCCTTTCAGATGGCATGATGAGAGAAATGCCATGGCGGGGTGCCGGTGTAGCAATCCCCATGTTTTCTATTAGATCAGAGGCTGATCTAGGAGTTGGAGAGTTTCTTGATCTAAAATTACTTGTTGACTGGGCTGTTGACTCTGGCTTTCATTTAGTTCAGCTTTTGCCAATCAACGATACATCAGTGAACAAGATGTGGTGGGACTCTTATCCATACAGCTCTCTCTCCGTCTTTGCATTGCACCCATTGTATCTTAGAGTACAAGCACTTTCCGAGAATATTCCAGAGGAGATAAAGGTTGTCGTTGTACCTTTTCACTTAAATGAAACGAAAATACGCTTGCCGAAGACACGTACTGATTTTTTTTATTTATCTGCATTTATAAGAGCAAGAGATACAGATGGCAAGAGAACAGTTGGATGGAAAGCTATATCCCTATTTTTTCAGCTAGAGAAACTTGTCTCGAAAGACGCCATCCATTACGACATAATTTGCTTTCATTATTATATTCAGTTTCATTTACATCTACAATTGTCAGAATCGGCAGAATATGCAAGAAAGAAAGGAGTCATTCTGAAAGGGGACCTCCCAATTGGTGTCGACAGAAATAGTGTGGATACATGGGTCTATCCAACTTTGTTCCGCATGACCACGGCTACTGGTGCACCTCCAGACTATTTCGATAAAAATGGCCAGAATTGGGGATTTCCCACTTATAATTGGGAGGAAATGTCAAAAGACAACTATGCTTGGTGGCGTGCTCGTTTAACACAGATGGCGAAGTACTTTACAGCTTACAGGATCGATCATATATTGGGTTTCTTTAGAATCTGGGAGCTTCCAGATCATGCAATGACAGGTCTGGTAGGGAAGTTCAGGCCTTCTATCCCCCTAAGTCAGGAAGAGCTTGAAAGAGAGGGAATATGGGACTTTGATCGCTTGAGCCGTCCATACATTGTTGAGGAGACTTTACAGGATAAATTTGGACCTTCTTGGACTGTCATAGCTTGCAACTTTATGAATGAATTTGCAAAACATCGTTATGAGTTCAAGGAGGACTGCAACACAGAGAAAAAAGTTGCTTCCAAGCTAAAGTCATGTGCAGAAAAGTTGTTCTTAGAGAGCGAAGACAAATTTCGGCGAGATCTCTTTGATCTTCTGCAGAATATCGTCCTCATCAGAGATCCAGAGGATCCGAGAAAATTCTACCCTCGTTTCAATCTTGAAGATACATCAAGTTTCAAAGATTTAGATGAACACAGCAAAAATGTAATGAAAAGACTATACTATGATTACTATTTCCAACGGCAAGAAGGTCTTTGGCGTGAAAATGCTCTGAAGACCCTTCCTGCCCTCCTAAATTCATCTGATATGCTGGCCTGTGGAGAAGATCTAGGCCTGATTCCTTCTTGTGTTCATCCTGTTATGCAAGAATTGGGTTTAATAGGATTACGAATTCAACGTATGCCAAGTGAACCTGGTTTGGAATTTGGCATTCCTTCTCAATACAGCTACATGACGGTGTGCGCTCCATCATGCCATGACTGCTCCACACTGCGTGCTTGGTGGGAAGAAGATGAAGAAAGAAGAAGACGATTTTTCAAAACTATGGTGGGGCCTGACAAGTTGCCACCAAGTCAATGCATTCCTGAAATTGCGCATTTTATACTAAGGCAACATGTTGAAGCCCCATCGATGTGGGCAATTTTTCCTCTTCAGGATTTGATGGCTTTAAAAGAGGAATACACGTCACGGCCCGCAGCAGATGAGACAATTAATGATCCTACAAATCCAAAGCATTATTGGCGATACCGTAAGTGCTCCTTTTGCTTTCTCCTGCTTTGTAGTAGTTTACCCTCGTTTGCGTTGTTTCTGGACTTTTACTTTGTGCATGGTGTACACGTAACGTTAGAGTCCTTGGTCAAGGACAAAGAGCTTAAAACAGCCATCAAAGATCTTGTCCGTGGCAGTGGAAGATCTTATCCTCCTTCTGAAGAAGTCGAAGTGCAAGCCGCTAGTGGAAAGGCAAGTGCTGTGCCCGAGCAGCAATTATCCGGTGGGCAGGAAAAGGTTCCTTCTACTACCCAACCAAACGGAATTTCTAAAAACAAGAGTGTAGCAGTTGCTTAA

Network for GWHGAAZE007244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00686.20	CBM_20	16	107	7.70E-19
PF00686.20	CBM_20	160	258	2.10E-07
PF02446.18	Glyco_hydro_77	282	357	3.30E-20
PF02446.18	Glyco_hydro_77	398	869	9.50E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00705	malQ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:2001070	molecular_function	starch binding
GO:0030246	molecular_function	carbohydrate binding
GO:0004134	molecular_function	4-alpha-glucanotransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.519
	SRR3591706	second leaf	16.178
	SRR3591707	mature leaf	31.911
	SRR3591708	Shoot apex	19.060
	SRR3591709	Stem	17.005
	SRR3591710	White floral bud	18.222
	SRR3591711	White flower	21.304
	SRR3591712	Green floral bud	35.952
	SRR3591713	Yellow flower	16.003
SRP173429	SRR8316895	Juvenile bud stage	19.332
	SRR8316896	Juvenile bud stage	30.341
	SRR8316897	Juvenile bud stage	12.075
	SRR8316894	Third green stage	14.212
	SRR8316900	Third green stage	44.563
	SRR8316901	Third green stage	38.519
	SRR8316898	Complete white stage	8.082
	SRR8316899	Complete white stage	35.398
	SRR8316903	Complete white stage	15.164
	SRR8316902	Silver flowering stage	6.681
	SRR8316904	Silver flowering stage	11.740
	SRR8316905	Silver flowering stage	4.972
	SRR8316906	Gold flowering stage	16.811
	SRR8316907	Gold flowering stage	15.632
	SRR8316908	Gold flowering stage	10.616
SRP132670	SRR6706286	Control	25.238
	SRR6706287	Light intensity 50%	30.794
	SRR6706288	Light intensity 20%	33.304
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.999
	CNS0095593	Slightly white alabastrum(diploid) 2	23.211
	CNS0095594	Slightly white alabastrum(diploid) 3	14.126
	CNS0095595	Whole white alabastrum(diploid) 2	18.972
	CNS0095596	Whole white alabastrum(diploid) 3	18.285
	CNS0095597	Whole white alabastrum(diploid) 4	16.973
	CNS0095598	Silvery flower (diploied) 1	14.308
	CNS0095599	Silvery flower (diploied) 2	14.182
	CNS0095600	Silvery flower (diploied) 3	22.251
	CNS0095601	Golden flower (diploid) 1	11.783
	CNS0095602	Golden flower (diploid) 2	20.006
	CNS0095603	Golden flower (diploid) 3	18.433
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.756
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.371
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.016
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.446
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.975
	CNS0095609	Whole white alabastrum(tetraploid) 3	47.430
	CNS0095610	Silvery flower (tetraploid) 1	15.771
	CNS0095611	Silvery flower (tetraploid) 2	21.586
	CNS0095612	Silvery flower (tetraploid) 3	17.787
	CNS0095613	Golden flower (tetraploid) 1	3.938
	CNS0095614	Golden flower (tetraploid) 2	10.279
	CNS0095615	Golden flower (tetraploid) 3	2.218
CRA001975	CRR073297	Stem 1	26.467
	CRR073298	Stem 2	24.319
	CRR073299	Stem 3	22.610
	CRR073300	Leaf 1	29.675
	CRR073301	Leaf 2	26.374
	CRR073302	Leaf 3	22.918
	CRR073303	Juvenile bud 1	19.446
	CRR073304	Juvenile bud 2	16.584
	CRR073305	Juvenile bud 3	24.055
	CRR073306	Third green 1	4.487
	CRR073307	Third green 2	3.197
	CRR073308	Third green 3	5.244
	CRR073309	Second white 1	7.063
	CRR073310	Second white 2	6.818
	CRR073311	Second white 3	7.423
	CRR073312	Silver flowering 1	4.769
	CRR073313	Silver flowering 2	3.908
	CRR073314	Silver flowering 3	3.223
	CRR073315	Gold flowering 1	29.987
	CRR073316	Gold flowering 2	44.738
	CRR073317	Gold flowering 3	23.077
	CRR073318	Tawny withering 1	13.874
	CRR073319	Tawny withering 2	9.952
	CRR073320	Tawny withering 3	15.464