Detail information of GWHGAAZE007267


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268494.20PREDICTED: zinc finger protein VAR3, chloroplastic [Vitis vinifera]
Swissprottr|Q8S9K3|VAR3_ARATH3E-110Zinc finger protein VAR3, chloroplastic (Precursor)
trEMBLtr|F6HMX3|F6HMX3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55998.1}
TAIR10AT5G17790.11E-99zinc finger (Ran-binding) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4163731741648751-
GWHAAZE00000002mRNA4163731741648751-
GWHAAZE00000002exon4164867941648751-
GWHAAZE00000002exon4164530641645351-
GWHAAZE00000002exon4164486541645152-
GWHAAZE00000002exon4164440641644495-
GWHAAZE00000002exon4164391841644056-
GWHAAZE00000002exon4164254141642675-
GWHAAZE00000002exon4164235141642431-
GWHAAZE00000002exon4164183641641982-
GWHAAZE00000002exon4164125341641465-
GWHAAZE00000002exon4164111341641129-
GWHAAZE00000002exon4164057541640673-
GWHAAZE00000002exon4163888241640470-
GWHAAZE00000002exon4163731741637357-
GWHAAZE00000002CDS4164867941648751-
GWHAAZE00000002CDS4164530641645351-
GWHAAZE00000002CDS4164486541645152-
GWHAAZE00000002CDS4164440641644495-
GWHAAZE00000002CDS4164391841644056-
GWHAAZE00000002CDS4164254141642675-
GWHAAZE00000002CDS4164235141642431-
GWHAAZE00000002CDS4164183641641982-
GWHAAZE00000002CDS4164125341641465-
GWHAAZE00000002CDS4164111341641129-
GWHAAZE00000002CDS4164057541640673-
GWHAAZE00000002CDS4163888241640470-
GWHAAZE00000002CDS4163731741637357-
Transcript Sequence

Network for GWHGAAZE007267

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0217


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00641.19zf-RanBP4374635.90E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.543
SRR3591706second leaf30.820
SRR3591707mature leaf33.796
SRR3591708Shoot apex22.086
SRR3591709Stem13.124
SRR3591710White floral bud24.294
SRR3591711White flower49.842
SRR3591712Green floral bud34.449
SRR3591713Yellow flower43.226
SRP173429 SRR8316895Juvenile bud stage 19.003
SRR8316896Juvenile bud stage 23.638
SRR8316897Juvenile bud stage 13.327
SRR8316894Third green stage 10.416
SRR8316900Third green stage 38.724
SRR8316901Third green stage 30.722
SRR8316898Complete white stage 8.696
SRR8316899Complete white stage 33.293
SRR8316903Complete white stage 15.045
SRR8316902Silver flowering stage13.600
SRR8316904Silver flowering stage20.617
SRR8316905Silver flowering stage9.832
SRR8316906Gold flowering stage 36.736
SRR8316907Gold flowering stage 34.730
SRR8316908Gold flowering stage 41.966
SRP132670SRR6706286Control35.029
SRR6706287Light intensity 50%36.895
SRR6706288Light intensity 20%38.751
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.438
CNS0095593Slightly white alabastrum(diploid) 220.596
CNS0095594Slightly white alabastrum(diploid) 317.544
CNS0095595Whole white alabastrum(diploid) 218.281
CNS0095596Whole white alabastrum(diploid) 318.401
CNS0095597Whole white alabastrum(diploid) 415.465
CNS0095598Silvery flower (diploied) 124.874
CNS0095599Silvery flower (diploied) 221.352
CNS0095600Silvery flower (diploied) 347.152
CNS0095601Golden flower (diploid) 121.310
CNS0095602Golden flower (diploid) 243.257
CNS0095603Golden flower (diploid) 343.500
CNS0095604Slightly white alabastrum(tetraploid) 127.842
CNS0095605Slightly white alabastrum(tetraploid) 223.324
CNS0095606Slightly white alabastrum(tetraploid) 349.320
CNS0095607Whole white alabastrum(tetraploid) 115.587
CNS0095608Whole white alabastrum(tetraploid) 215.239
CNS0095609Whole white alabastrum(tetraploid) 352.968
CNS0095610Silvery flower (tetraploid) 163.826
CNS0095611Silvery flower (tetraploid) 272.032
CNS0095612Silvery flower (tetraploid) 373.428
CNS0095613Golden flower (tetraploid) 137.619
CNS0095614Golden flower (tetraploid) 261.064
CNS0095615Golden flower (tetraploid) 345.793
CRA001975CRR073297Stem 131.131
CRR073298Stem 230.126
CRR073299Stem 328.583
CRR073300Leaf 129.391
CRR073301Leaf 228.640
CRR073302Leaf 325.266
CRR073303Juvenile bud 129.757
CRR073304Juvenile bud 224.961
CRR073305Juvenile bud 331.559
CRR073306Third green 112.849
CRR073307Third green 27.583
CRR073308Third green 312.930
CRR073309Second white 128.389
CRR073310Second white 228.287
CRR073311Second white 332.698
CRR073312Silver flowering 127.636
CRR073313Silver flowering 230.510
CRR073314Silver flowering 326.354
CRR073315Gold flowering 138.299
CRR073316Gold flowering 263.930
CRR073317Gold flowering 336.289
CRR073318Tawny withering 117.777
CRR073319Tawny withering 215.398
CRR073320Tawny withering 316.076