Gene detail

Detail information of GWHGAAZE007270

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011094156.1	PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Sesamum indicum]
Swissprot	tr\|Q42699\|METE_CATRO	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
trEMBL	tr\|G3G858\|G3G858_CAMSI	Methionine synthase {ECO:0000313\|EMBL:AEO86798.1}
TAIR10	AT5G17920.2	Cobalamin-independent synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	41789917	41793694	+
GWHAAZE00000002	mRNA	41789917	41793694	+
GWHAAZE00000002	exon	41789917	41790266	+
GWHAAZE00000002	exon	41790379	41790466	+
GWHAAZE00000002	exon	41790985	41791112	+
GWHAAZE00000002	exon	41791202	41791593	+
GWHAAZE00000002	exon	41791686	41791849	+
GWHAAZE00000002	exon	41791964	41792044	+
GWHAAZE00000002	exon	41792164	41792330	+
GWHAAZE00000002	exon	41792433	41792538	+
GWHAAZE00000002	exon	41792650	41792900	+
GWHAAZE00000002	exon	41793043	41793244	+
GWHAAZE00000002	exon	41793326	41793694	+
GWHAAZE00000002	CDS	41789917	41790266	+
GWHAAZE00000002	CDS	41790379	41790466	+
GWHAAZE00000002	CDS	41790985	41791112	+
GWHAAZE00000002	CDS	41791202	41791593	+
GWHAAZE00000002	CDS	41791686	41791849	+
GWHAAZE00000002	CDS	41791964	41792044	+
GWHAAZE00000002	CDS	41792164	41792330	+
GWHAAZE00000002	CDS	41792433	41792538	+
GWHAAZE00000002	CDS	41792650	41792900	+
GWHAAZE00000002	CDS	41793043	41793244	+
GWHAAZE00000002	CDS	41793326	41793694	+

Transcript Sequence
>GWHTAAZE007278 ATGGCATCCCACATTGTTGGATATCCCCGCATGGGCCCCAAGAGAGAGCTCAAGTTTGCCCTTGAATCATTCTGGGATGGCAAGAGCAGTGCCGAGGATTTGCAAAAGGTAGCTGCAGAGCTCAGGTCATCCATCTGGAAGCAGATGGCTGATGCTGGCATCAAGTATATCCCCAGCAACACTTTTGCTTACTATGACCAGGTCCTAGATACAACCGCAATGCTCGGGGCTGTACCATCTAGGTACAACTGGGATGGCAGTGAGATTGGATTTGACACCTACTTCTCCATGGGTAGAGGAAATGCCTCTGTGCCTGCTATGGAAATGACCAAGTGGTTCGACACCAACTACCATTTCATCGTCCCTGAATTGGGCCCTGATGTCAAGTTTAGCTATGGTTCTCACAAGGCCGTTAACGAATACAAGGAGGCCAAGGCGCTTGGAGTCGATACCGTCCCTGTCCTTGTTGGTCCAGTCAGCTACTTGTTGCTATCTAAGCCTGCAAAGGGTGTTGAAAAGACCTTTGACCTTCTCTCCCTTCTTGACCAGATCCTCCCAATCTACAAGGAGGTAATTGGAGAGTTGAAGGCTGCTGGTGCTACATGGATTCAATTCGATGAGCCCACACTTGTGAAGGATCTTGAATCTCATCAATTGAAAGCATTCACCGAGGCCTACTCCAAGCTAGAATCATGCCTATCTGGTCTTAACGTTCTAGTCGAGACCTACTTTGCCGATGTTCCTGCTGATGCATTCAAGACCCTCACTTCCCTTAAGGGTGTTACTGGTTTTGGGTTTGATTTGATCCGTGGAGCTAAGACCCTTGATTTGATCAAGAGTGAATTCCCCAAGGGCAAATACCTTTTTGCTGGAGTGGTTGATGGAAGGAACATCTGGGCCAATGACCTTGCTGGATCTCTCAGCACCCTCAAGTCTCTTGAGAGCATTGTAGGAAAAGACAAGCTCGTAGTGTCTACCTCGTGCTCGCTTCTTCACACCGCTGTTGATCTCATTAACGAGACCAAGCTCGACAAGGAAATCAAGTCATGGCTTGCATTCGCTGCCCAAAAGGTCGTTGAGGTCAATGCTTTGGCCAAGGCCTTGTCTGGTCACAAGGATGAGGAATTCTTCTCTGCTAATGCTGCAGCTCAGGCTTCAAGGAAGACCTCCCCAAGGGTGACCAACGAAGCTGTCCAGAAGGCTGCTGCTGCTTTGAGGGGATCTGATCACCGCCGTGCTACAAATGTTAGTGCTAGACTTGATGCCCAACAGAAGCAGCTCAACCTTCCAATCCTTCCAACAACCACCATTGGGTCTTTCCCACAGACAATGGAACTAAGGAAAGTTCGCCGCGAGTACAAGGCAAAGAAGATTTCTGAGGATCACTACGTGAGCGCCATTAAGGAGGAAATCAGCAAGGTTGTGAAGCTCCAGGAAGAGCTTGATATTGATGTCTTGGTTCACGGAGAGCCAGAGAGGAACGATATGGTTGAGTACTTCGGAGAGCAATTGTCCGGTTTTGCATTCACTGCCAATGGGTGGGTCCAATCTTATGGGTCTCGATGTGTGAAGCCCCCAATCATCTACGGTGATGTGAGCCGCCCCAAGGCAATGACCGTCTTCTGGTCCTCCATGGCTCAGAGCATGACCAAGCGCCCAATGAAGGGCATGCTTACTGGCCCTGTCACCATCCTAAATTGGTCTTTTGTTCGTAATGACCAGCCCAGATTTGAGACTTGTTACCAGATTGCTTTGGCCATCAAGGACGAAGTTGAGGACCTAGAGAAGGCTGGCATCACCGTTATCCAGATCGACGAGGCTGCCCTTAGAGAGGGATTGCCCCTAAGGAAGTCGGAACACGCTTTCTACTTGGACTGGGCTGTCCACTCCTTCAGAATCACCAACTGCGGCGTCAAAGACACTACCCAGATCCACACCCACATGTGCTACTCAAACTTCAACGACATCATCCACTCCATCATCAACATGGATGCCGACGTCATCACCATTGAGAACTCTAGATCTGATGAGAAGCTTTTGTCCGTGTTCCGTGAGGGAGTGAAGTACGGTGCTGGAATTGGGCCCGGTGTGTATGATATCCACTCCCCAAGAATACCATCCACTGAGGAAATTGCCGACAGAATCAACAAGATGCTTGCAGTGCTCGAGACCAACATCTTGTGGGTGAACCCCGACTGTGGGCTCAAGACCCGCAAGTACGCTGAAGTGAACCCAGCCCTCAAGAACATGGTTTCCGCAGCCAAGCTCCTCCGCACCCAGCTCGCCAGCGCCAAGTGA

Network for GWHGAAZE007270

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08267.13	Meth_synt_1	3	316	8.70E-119
PF01717.19	Meth_synt_2	432	755	1.80E-158

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00549	metE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270
		Selenocompound metabolism	map00450

Gene Ontology

GO term	Ontology	Name
GO:0009086	biological_process	methionine biosynthetic process
GO:0008652	biological_process	cellular amino acid biosynthetic process
GO:0003871	molecular_function	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1588.633
	SRR3591706	second leaf	1286.458
	SRR3591707	mature leaf	341.897
	SRR3591708	Shoot apex	887.707
	SRR3591709	Stem	2201.162
	SRR3591710	White floral bud	624.850
	SRR3591711	White flower	505.370
	SRR3591712	Green floral bud	1307.187
	SRR3591713	Yellow flower	394.653
SRP173429	SRR8316895	Juvenile bud stage	713.276
	SRR8316896	Juvenile bud stage	853.382
	SRR8316897	Juvenile bud stage	380.140
	SRR8316894	Third green stage	363.486
	SRR8316900	Third green stage	988.139
	SRR8316901	Third green stage	879.073
	SRR8316898	Complete white stage	108.972
	SRR8316899	Complete white stage	433.391
	SRR8316903	Complete white stage	225.461
	SRR8316902	Silver flowering stage	187.723
	SRR8316904	Silver flowering stage	266.772
	SRR8316905	Silver flowering stage	144.921
	SRR8316906	Gold flowering stage	465.213
	SRR8316907	Gold flowering stage	505.652
	SRR8316908	Gold flowering stage	858.685
SRP132670	SRR6706286	Control	728.503
	SRR6706287	Light intensity 50%	834.553
	SRR6706288	Light intensity 20%	893.584
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	613.193
	CNS0095593	Slightly white alabastrum(diploid) 2	559.800
	CNS0095594	Slightly white alabastrum(diploid) 3	607.339
	CNS0095595	Whole white alabastrum(diploid) 2	545.295
	CNS0095596	Whole white alabastrum(diploid) 3	588.797
	CNS0095597	Whole white alabastrum(diploid) 4	508.643
	CNS0095598	Silvery flower (diploied) 1	294.294
	CNS0095599	Silvery flower (diploied) 2	316.238
	CNS0095600	Silvery flower (diploied) 3	249.310
	CNS0095601	Golden flower (diploid) 1	172.406
	CNS0095602	Golden flower (diploid) 2	248.274
	CNS0095603	Golden flower (diploid) 3	237.744
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1016.039
	CNS0095605	Slightly white alabastrum(tetraploid) 2	903.369
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1798.980
	CNS0095607	Whole white alabastrum(tetraploid) 1	783.140
	CNS0095608	Whole white alabastrum(tetraploid) 2	715.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	1433.314
	CNS0095610	Silvery flower (tetraploid) 1	325.508
	CNS0095611	Silvery flower (tetraploid) 2	270.867
	CNS0095612	Silvery flower (tetraploid) 3	603.869
	CNS0095613	Golden flower (tetraploid) 1	269.343
	CNS0095614	Golden flower (tetraploid) 2	371.495
	CNS0095615	Golden flower (tetraploid) 3	149.141
CRA001975	CRR073297	Stem 1	1851.092
	CRR073298	Stem 2	1745.667
	CRR073299	Stem 3	2211.819
	CRR073300	Leaf 1	1914.293
	CRR073301	Leaf 2	1901.645
	CRR073302	Leaf 3	1814.429
	CRR073303	Juvenile bud 1	1663.931
	CRR073304	Juvenile bud 2	1496.211
	CRR073305	Juvenile bud 3	1840.554
	CRR073306	Third green 1	2949.233
	CRR073307	Third green 2	1442.383
	CRR073308	Third green 3	1935.998
	CRR073309	Second white 1	2076.672
	CRR073310	Second white 2	1235.906
	CRR073311	Second white 3	1473.811
	CRR073312	Silver flowering 1	2341.280
	CRR073313	Silver flowering 2	3294.257
	CRR073314	Silver flowering 3	2309.068
	CRR073315	Gold flowering 1	303.189
	CRR073316	Gold flowering 2	421.861
	CRR073317	Gold flowering 3	449.006
	CRR073318	Tawny withering 1	1751.099
	CRR073319	Tawny withering 2	1126.316
	CRR073320	Tawny withering 3	2090.851