Gene detail

Detail information of GWHGAAZE007277

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008240500.1	0	PREDICTED: lysosomal beta glucosidase-like [Prunus mume]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	2E-38	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|A0A059DI26\|A0A059DI26_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW89890.1}
TAIR10	AT5G20950.2	0	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	41857408	41862946	+
GWHAAZE00000002	mRNA	41857408	41862946	+
GWHAAZE00000002	exon	41857408	41857453	+
GWHAAZE00000002	exon	41858877	41859115	+
GWHAAZE00000002	exon	41859199	41859403	+
GWHAAZE00000002	exon	41860110	41860200	+
GWHAAZE00000002	exon	41860303	41860445	+
GWHAAZE00000002	exon	41860834	41861077	+
GWHAAZE00000002	exon	41861193	41861297	+
GWHAAZE00000002	exon	41861388	41861570	+
GWHAAZE00000002	exon	41861669	41861873	+
GWHAAZE00000002	exon	41862465	41862946	+
GWHAAZE00000002	five_prime_UTR	41857408	41857439	+
GWHAAZE00000002	CDS	41857440	41857453	+
GWHAAZE00000002	CDS	41858877	41859115	+
GWHAAZE00000002	CDS	41859199	41859403	+
GWHAAZE00000002	CDS	41860110	41860200	+
GWHAAZE00000002	CDS	41860303	41860445	+
GWHAAZE00000002	CDS	41860834	41861077	+
GWHAAZE00000002	CDS	41861193	41861297	+
GWHAAZE00000002	CDS	41861388	41861570	+
GWHAAZE00000002	CDS	41861669	41861873	+
GWHAAZE00000002	CDS	41862465	41862946	+

Transcript Sequence
>GWHTAAZE007285 CAGTACTTTCTCTCTCTATATCCAACATCAATATGGGTTCAACTCTGCAAATTCAGGGGATGAAAATGGTGAGATCGCACATAGTGTTGATTGGATTGTTAGCTATGTATTGCTGGGCTGCAGAGGCAGATCCTGAGTACATAATATATAAAGATCCAAAGCAGCCAATTAATGCTCGAATCAAGGACCTAATGAGCCAAATGACTTTAGAGGAAAAGATTGGCCAAATGGCTCAGATTGATCGGCGTGTCACCACCTTCGATGTCATGAAGAATTTTTTCATTGGGAGTGTATTGAGTGGGGGTGGGAGTGTTCCGGCTAAAGAGGCGCCCCCAGAGACGTGGGTGAACATGTTTAATGAGTTTCAAAGGGGTGCACTAGCGACCCGTCTTGGGATACCCATGATTTACGGGATTGATGCTGTTCATGGCAACAATAATGTCTTTAATGCCACGATTTTTCCTCATAACATTGGTCTAGGAGCTACTAGGGACCCTGAATTGGTCAAGAGGATCGCTACTGCAACTGCCCTTGAAGTCAGAGCCACTGGACTTAATTACGCTTTTGCACCTTGTATTGCGGTTTGTAGAGATCCCAGATGGGGCCGTTGTTTTGAAAGCTTCAGCGAAGATCCCCGTATTGTTCGAGCAATGACTGAGAGCATACCAGGCTTACAAGGAGACGTTCCTCCTAATTATCGGAAGGGAACACCATATGTTGCAAAAGATAGGGTTGTGGGATGTGCCAAGCACTATGTGGGTGATGGTGGAACGGTAAATGGCAAAGATGAGAACAATACTGTGGTAAACTGGCATGAATTGTTAAGCATCCATATGCCAGCCTACTATGACTCCATTATCAAGGGCGTTGCAAGCATAATGGTCTCATACTCAAGCTGGAACGGCGTAAAAATGCACACCCATCTTGATCTTGTCACCGGCTTTCTCAAAAACAAGCTACGGTTCAGGGGGTTTGTTATCTCGGATTGGGAAGCTGTGGATAGAATAACAGACCCGCCTCATGTTAACTACACATGGTCCCTTTCAGCTACTGTTCAAGCTGGCCTAGACATGATCATGATACCATACAACTACACAGAGTTCTTCAACGATATGAAATTCCTCGTGAAGAACAAATACATTTCCATGAGTCGGATAGACGATGCAGTGAAGAGGATTTTACGGGTAAAATTTGAGATGGGTTTGTTTGAGAATCCATTGTCTGATCTCAGCTATGCCAAATACCTAGGATGCAAGGAGCATAGAGAACTAGCAAGAGAAGCAGTAAGAAAATCTCTTGTGCTGCTGAAGAACGGTAAACTTGGCGATCCACCAATGCTACCTCTTCCCAAGAAGGCGTCAAAAATACTTGTTGCTGGAGCCCATGCTGACAATTTGGGATATCAGTGCGGCGGCTGGACAATTACGTGGGAAGGACTTAGTGGCAACAATCTCACTGCTGGTACCACAATCCTCTCAGCCATAAAGAGCACCGTCGAAGCAGGAACACAAGTTGACTATCAAGAGAACCCAAGCCTAGACTACATAAAGTCCAACAATTTCGAATACGCAATCGTGGTTGTCGGAGAGCACTCGTACGTAGAATACTACGGCGACAACTTGAACTTGACAATGCCTGAGCCAGGCCCTGCCACCATAAACAACGTGTGTGCTAACGTCAAATGCGTAGTCGTTATAATCTCGGGCCGTCCTGTTGTGCTCGAACCGTATGTTGACATAGTGGACGGACTTGTAGCTGCCTGGCTTCCAGGAACCGAAGGCCAAGGTGTTGTTGACATTTTGTTTGGTGACTTTGGTTTCACCGGCAAGTTACCCCGGACTTGGTTTAAGACCGTTGATCAGCTCCCGATGAACTTCGGTGATAGCCGGTATGACCCGTTGTTCCCATTTGGATACGGACTCACCACTGATCCTGTCAAATAA

Network for GWHGAAZE007277

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	58	385	1.00E-67
PF01915.23	Glyco_hydro_3_C	422	631	1.70E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05349	bglX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.445
	SRR3591706	second leaf	6.142
	SRR3591707	mature leaf	10.487
	SRR3591708	Shoot apex	4.714
	SRR3591709	Stem	26.223
	SRR3591710	White floral bud	245.067
	SRR3591711	White flower	379.981
	SRR3591712	Green floral bud	65.682
	SRR3591713	Yellow flower	650.362
SRP173429	SRR8316895	Juvenile bud stage	25.807
	SRR8316896	Juvenile bud stage	89.375
	SRR8316897	Juvenile bud stage	41.822
	SRR8316894	Third green stage	30.308
	SRR8316900	Third green stage	79.493
	SRR8316901	Third green stage	82.105
	SRR8316898	Complete white stage	60.475
	SRR8316899	Complete white stage	15.732
	SRR8316903	Complete white stage	100.340
	SRR8316902	Silver flowering stage	54.956
	SRR8316904	Silver flowering stage	99.214
	SRR8316905	Silver flowering stage	62.675
	SRR8316906	Gold flowering stage	229.216
	SRR8316907	Gold flowering stage	216.170
	SRR8316908	Gold flowering stage	272.687
SRP132670	SRR6706286	Control	96.503
	SRR6706287	Light intensity 50%	101.399
	SRR6706288	Light intensity 20%	79.771
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	88.048
	CNS0095593	Slightly white alabastrum(diploid) 2	59.701
	CNS0095594	Slightly white alabastrum(diploid) 3	107.993
	CNS0095595	Whole white alabastrum(diploid) 2	63.639
	CNS0095596	Whole white alabastrum(diploid) 3	85.193
	CNS0095597	Whole white alabastrum(diploid) 4	56.962
	CNS0095598	Silvery flower (diploied) 1	93.730
	CNS0095599	Silvery flower (diploied) 2	82.219
	CNS0095600	Silvery flower (diploied) 3	321.371
	CNS0095601	Golden flower (diploid) 1	100.024
	CNS0095602	Golden flower (diploid) 2	421.501
	CNS0095603	Golden flower (diploid) 3	413.569
	CNS0095604	Slightly white alabastrum(tetraploid) 1	125.490
	CNS0095605	Slightly white alabastrum(tetraploid) 2	117.910
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.136
	CNS0095607	Whole white alabastrum(tetraploid) 1	111.485
	CNS0095608	Whole white alabastrum(tetraploid) 2	93.415
	CNS0095609	Whole white alabastrum(tetraploid) 3	88.235
	CNS0095610	Silvery flower (tetraploid) 1	670.326
	CNS0095611	Silvery flower (tetraploid) 2	679.811
	CNS0095612	Silvery flower (tetraploid) 3	481.014
	CNS0095613	Golden flower (tetraploid) 1	589.174
	CNS0095614	Golden flower (tetraploid) 2	886.999
	CNS0095615	Golden flower (tetraploid) 3	1048.217
CRA001975	CRR073297	Stem 1	53.744
	CRR073298	Stem 2	49.993
	CRR073299	Stem 3	46.335
	CRR073300	Leaf 1	43.968
	CRR073301	Leaf 2	50.939
	CRR073302	Leaf 3	45.336
	CRR073303	Juvenile bud 1	31.032
	CRR073304	Juvenile bud 2	51.020
	CRR073305	Juvenile bud 3	20.949
	CRR073306	Third green 1	165.127
	CRR073307	Third green 2	144.450
	CRR073308	Third green 3	126.764
	CRR073309	Second white 1	430.589
	CRR073310	Second white 2	153.298
	CRR073311	Second white 3	169.445
	CRR073312	Silver flowering 1	351.538
	CRR073313	Silver flowering 2	466.982
	CRR073314	Silver flowering 3	403.357
	CRR073315	Gold flowering 1	15.268
	CRR073316	Gold flowering 2	17.620
	CRR073317	Gold flowering 3	11.377
	CRR073318	Tawny withering 1	20.984
	CRR073319	Tawny withering 2	15.674
	CRR073320	Tawny withering 3	14.065