Gene detail

Detail information of GWHGAAZE007301

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006466578.1	1.01451E-84	PREDICTED: transcription factor RAX3-like [Citrus sinensis]
Swissprot	tr\|Q9M2Y9\|RAX3_ARATH	6E-74	Transcription factor RAX3
trEMBL	tr\|D7UEC5\|D7UEC5_VITVI	6E-87	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI41089.3}
TAIR10	AT5G65790.1	1E-62	myb domain protein 68

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	42412998	42414136	-
GWHAAZE00000002	mRNA	42412998	42414136	-
GWHAAZE00000002	exon	42412998	42413526	-
GWHAAZE00000002	exon	42413760	42413889	-
GWHAAZE00000002	exon	42414001	42414136	-
GWHAAZE00000002	CDS	42414001	42414136	-
GWHAAZE00000002	CDS	42413760	42413889	-
GWHAAZE00000002	CDS	42412998	42413526	-

Transcript Sequence
>GWHTAAZE007309 ATGGGGAGATCACCTTGCTGTGACAAAGCCAAGGTGAAGAAAGGGCCATGGTCCCCTGAAGAAGATTCCATCCTCAAATCCTACCTCCAACATCACGACCACCCCGGCAACTGGATTTCTTTACCCCAGAAAATAGGCCTTAACAGGTGTGGGAAGAGTTGTCGGCTTAGATGGTTGAATTATCTCCGTCCAAACATCAAGCATGGAGGATTCTCGGAGGAAGAAGATAACATAATTTGCGATCTCTATATGAATATCGGTAGCAGGTGGTCTATAATTGCTGCACAATTACCGGGACGAACAGATAATGATATAAAGAATTACTGGAACACAAAACTGAAGAAAAAGGTAGCGGAAAAGCAACGCAGGGAACAACAGACATCTCGACGAGTCAAGCAGGAGATAATGAAGAGAGAAAATGACAACAATTTTATGGCTCGTAATCAAGCCATGAATATCCCTTTCAATACTAATTACTTGGTGGATCAAACACAAAACAGCACAAATTTTCAATATTCTATTGATAATTTACACGCGAATTCCATGAATTCGTCAGTAAACGACACTTTTTCCCCGTTGTCAAACGCTCACTTTCTAAATAATTTTCAGGGATTTAACAACTTCACGATTGATGATCAGCTAGATGAAATAGTGTATAATAGCGCCAATGATCAGCAATTAGATGAATTATTGTGCGAAGTGCAAATTTTTAATGGTAGCAGTAGTGGCAGTGGGATTAGTTCTACACAAAGTAGCAACTGGGGAGATACAAGCTCACTTATGTGTCCTTTGTTG

Network for GWHGAAZE007301

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	62	1.10E-12
PF00249.32	Myb_DNA-binding	69	111	9.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.006
	SRR3591707	mature leaf	0.007
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.158
	SRR3591710	White floral bud	0.572
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.005
	SRR3591713	Yellow flower	0.593
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.194
	SRR8316903	Complete white stage	0.129
	SRR8316902	Silver flowering stage	0.138
	SRR8316904	Silver flowering stage	0.093
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.543
	SRR8316907	Gold flowering stage	0.239
	SRR8316908	Gold flowering stage	1.612
SRP132670	SRR6706286	Control	0.402
	SRR6706287	Light intensity 50%	0.028
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.611
	CNS0095594	Slightly white alabastrum(diploid) 3	0.569
	CNS0095595	Whole white alabastrum(diploid) 2	0.347
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.097
	CNS0095598	Silvery flower (diploied) 1	0.433
	CNS0095599	Silvery flower (diploied) 2	1.284
	CNS0095600	Silvery flower (diploied) 3	0.208
	CNS0095601	Golden flower (diploid) 1	1.643
	CNS0095602	Golden flower (diploid) 2	0.355
	CNS0095603	Golden flower (diploid) 3	0.343
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.224
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.358
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.298
	CNS0095611	Silvery flower (tetraploid) 2	0.166
	CNS0095612	Silvery flower (tetraploid) 3	0.826
	CNS0095613	Golden flower (tetraploid) 1	1.082
	CNS0095614	Golden flower (tetraploid) 2	0.291
	CNS0095615	Golden flower (tetraploid) 3	0.329
CRA001975	CRR073297	Stem 1	0.012
	CRR073298	Stem 2	0.098
	CRR073299	Stem 3	0.002
	CRR073300	Leaf 1	0.009
	CRR073301	Leaf 2	0.115
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.044
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.130
	CRR073307	Third green 2	0.330
	CRR073308	Third green 3	0.071
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.103
	CRR073311	Second white 3	0.167
	CRR073312	Silver flowering 1	0.250
	CRR073313	Silver flowering 2	0.185
	CRR073314	Silver flowering 3	0.262
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.015
	CRR073317	Gold flowering 3	0.031
	CRR073318	Tawny withering 1	3.399
	CRR073319	Tawny withering 2	6.576
	CRR073320	Tawny withering 3	0.299