Detail information of GWHGAAZE007306


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008440458.10PREDICTED: cysteine desulfurase 1, mitochondrial [Cucumis melo]
Swissprottr|O49543|NFS1_ARATH0Cysteine desulfurase 1, mitochondrial (Precursor)
trEMBLtr|M5WHW3|M5WHW3_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ06370.1}
TAIR10AT5G65720.10nitrogen fixation S (NIFS)-like 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4250250242505120-
GWHAAZE00000002mRNA4250250242505120-
GWHAAZE00000002exon4250465042505120-
GWHAAZE00000002exon4250250242503447-
GWHAAZE00000002five_prime_UTR4250506942505120-
GWHAAZE00000002CDS4250465042505068-
GWHAAZE00000002CDS4250250242503447-
Transcript Sequence

Network for GWHGAAZE007306

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00266.20Aminotran_5574181.40E-87
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04487iscS, NFS1 Metabolic pathways map01100
Thiamine metabolismmap00730
Sulfur relay systemmap04122

Gene Ontology

GO term OntologyName
GO:0044571biological_process[2Fe-2S] cluster assembly
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0031071molecular_functioncysteine desulfurase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.860
SRR3591706second leaf61.403
SRR3591707mature leaf98.813
SRR3591708Shoot apex39.868
SRR3591709Stem90.359
SRR3591710White floral bud71.385
SRR3591711White flower101.629
SRR3591712Green floral bud50.000
SRR3591713Yellow flower63.654
SRP173429 SRR8316895Juvenile bud stage 53.796
SRR8316896Juvenile bud stage 60.309
SRR8316897Juvenile bud stage 31.565
SRR8316894Third green stage 22.070
SRR8316900Third green stage 70.068
SRR8316901Third green stage 75.281
SRR8316898Complete white stage 35.594
SRR8316899Complete white stage 109.562
SRR8316903Complete white stage 66.203
SRR8316902Silver flowering stage52.333
SRR8316904Silver flowering stage54.901
SRR8316905Silver flowering stage25.941
SRR8316906Gold flowering stage 67.908
SRR8316907Gold flowering stage 78.460
SRR8316908Gold flowering stage 75.209
SRP132670SRR6706286Control108.150
SRR6706287Light intensity 50%104.211
SRR6706288Light intensity 20%94.012
CNP0000432CNS0095592Slightly white alabastrum(diploid) 147.858
CNS0095593Slightly white alabastrum(diploid) 257.969
CNS0095594Slightly white alabastrum(diploid) 350.277
CNS0095595Whole white alabastrum(diploid) 249.306
CNS0095596Whole white alabastrum(diploid) 338.342
CNS0095597Whole white alabastrum(diploid) 444.834
CNS0095598Silvery flower (diploied) 179.200
CNS0095599Silvery flower (diploied) 276.669
CNS0095600Silvery flower (diploied) 3114.407
CNS0095601Golden flower (diploid) 180.535
CNS0095602Golden flower (diploid) 2107.842
CNS0095603Golden flower (diploid) 3105.345
CNS0095604Slightly white alabastrum(tetraploid) 148.524
CNS0095605Slightly white alabastrum(tetraploid) 241.816
CNS0095606Slightly white alabastrum(tetraploid) 393.858
CNS0095607Whole white alabastrum(tetraploid) 142.545
CNS0095608Whole white alabastrum(tetraploid) 239.211
CNS0095609Whole white alabastrum(tetraploid) 372.920
CNS0095610Silvery flower (tetraploid) 1150.223
CNS0095611Silvery flower (tetraploid) 2123.450
CNS0095612Silvery flower (tetraploid) 334.529
CNS0095613Golden flower (tetraploid) 167.703
CNS0095614Golden flower (tetraploid) 2136.956
CNS0095615Golden flower (tetraploid) 389.624
CRA001975CRR073297Stem 145.478
CRR073298Stem 246.366
CRR073299Stem 344.375
CRR073300Leaf 145.814
CRR073301Leaf 248.684
CRR073302Leaf 337.997
CRR073303Juvenile bud 164.004
CRR073304Juvenile bud 260.912
CRR073305Juvenile bud 370.065
CRR073306Third green 193.883
CRR073307Third green 285.065
CRR073308Third green 386.605
CRR073309Second white 135.925
CRR073310Second white 241.741
CRR073311Second white 331.556
CRR073312Silver flowering 123.074
CRR073313Silver flowering 227.398
CRR073314Silver flowering 321.854
CRR073315Gold flowering 163.306
CRR073316Gold flowering 273.105
CRR073317Gold flowering 380.724
CRR073318Tawny withering 152.089
CRR073319Tawny withering 255.794
CRR073320Tawny withering 359.940