Detail information of GWHGAAZE007313


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009630111.19.5798E-119PREDICTED: WD repeat-containing protein 5 [Nicotiana tomentosiformis]
Swissprottr|Q8W1K8|MUT11_CHLRE3E-80Protein Mut11
trEMBLtr|W9RYJ3|W9RYJ3_9ROSA2E-117WD repeat-containing protein 5 {ECO:0000313|EMBL:EXC03890.1}
TAIR10AT3G49660.17E-90Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4267035242671101-
GWHAAZE00000002mRNA4267035242671101-
GWHAAZE00000002exon4267035242671101-
GWHAAZE00000002CDS4267035242671101-
Transcript Sequence

Network for GWHGAAZE007313

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4018532.20E-06
PF00400.33WD4059969.40E-11
PF00400.33WD401011386.70E-09
PF00400.33WD401421791.10E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.552
SRR3591706second leaf3.788
SRR3591707mature leaf1.820
SRR3591708Shoot apex12.236
SRR3591709Stem4.573
SRR3591710White floral bud4.201
SRR3591711White flower4.894
SRR3591712Green floral bud6.376
SRR3591713Yellow flower1.857
SRP173429 SRR8316895Juvenile bud stage 4.982
SRR8316896Juvenile bud stage 7.921
SRR8316897Juvenile bud stage 5.703
SRR8316894Third green stage 3.012
SRR8316900Third green stage 9.542
SRR8316901Third green stage 7.756
SRR8316898Complete white stage 0.957
SRR8316899Complete white stage 6.462
SRR8316903Complete white stage 2.596
SRR8316902Silver flowering stage1.513
SRR8316904Silver flowering stage2.263
SRR8316905Silver flowering stage0.782
SRR8316906Gold flowering stage 1.962
SRR8316907Gold flowering stage 1.213
SRR8316908Gold flowering stage 1.694
SRP132670SRR6706286Control8.422
SRR6706287Light intensity 50%7.596
SRR6706288Light intensity 20%8.070
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.460
CNS0095593Slightly white alabastrum(diploid) 25.951
CNS0095594Slightly white alabastrum(diploid) 33.751
CNS0095595Whole white alabastrum(diploid) 23.407
CNS0095596Whole white alabastrum(diploid) 33.211
CNS0095597Whole white alabastrum(diploid) 43.009
CNS0095598Silvery flower (diploied) 13.911
CNS0095599Silvery flower (diploied) 25.482
CNS0095600Silvery flower (diploied) 34.625
CNS0095601Golden flower (diploid) 13.924
CNS0095602Golden flower (diploid) 24.996
CNS0095603Golden flower (diploid) 33.590
CNS0095604Slightly white alabastrum(tetraploid) 18.575
CNS0095605Slightly white alabastrum(tetraploid) 25.068
CNS0095606Slightly white alabastrum(tetraploid) 314.227
CNS0095607Whole white alabastrum(tetraploid) 13.335
CNS0095608Whole white alabastrum(tetraploid) 22.168
CNS0095609Whole white alabastrum(tetraploid) 38.301
CNS0095610Silvery flower (tetraploid) 16.310
CNS0095611Silvery flower (tetraploid) 26.311
CNS0095612Silvery flower (tetraploid) 34.046
CNS0095613Golden flower (tetraploid) 12.896
CNS0095614Golden flower (tetraploid) 23.879
CNS0095615Golden flower (tetraploid) 32.291
CRA001975CRR073297Stem 18.629
CRR073298Stem 210.093
CRR073299Stem 39.851
CRR073300Leaf 19.358
CRR073301Leaf 26.592
CRR073302Leaf 39.174
CRR073303Juvenile bud 15.478
CRR073304Juvenile bud 24.736
CRR073305Juvenile bud 38.398
CRR073306Third green 12.142
CRR073307Third green 21.662
CRR073308Third green 31.851
CRR073309Second white 14.237
CRR073310Second white 23.525
CRR073311Second white 33.350
CRR073312Silver flowering 12.555
CRR073313Silver flowering 22.928
CRR073314Silver flowering 31.237
CRR073315Gold flowering 12.171
CRR073316Gold flowering 22.788
CRR073317Gold flowering 32.454
CRR073318Tawny withering 14.828
CRR073319Tawny withering 22.921
CRR073320Tawny withering 33.162