Detail information of GWHGAAZE007315


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011073644.10PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Sesamum indicum]
Swissprottr|Q9T074|PCKA_ARATH0Phosphoenolpyruvate carboxykinase [ATP]
trEMBLtr|Q94LX7|Q94LX7_FLAPR0Phosphoenolpyruvate carboxykinase {ECO:0000313|EMBL:BAB43909.1}
TAIR10AT4G37870.10phosphoenolpyruvate carboxykinase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4274402542751478-
GWHAAZE00000002mRNA4274402542751478-
GWHAAZE00000002exon4275135242751478-
GWHAAZE00000002exon4275040442750676-
GWHAAZE00000002exon4274898442749186-
GWHAAZE00000002exon4274874042748893-
GWHAAZE00000002exon4274850842748592-
GWHAAZE00000002exon4274699642747096-
GWHAAZE00000002exon4274647142746769-
GWHAAZE00000002exon4274614942746322-
GWHAAZE00000002exon4274568142745746-
GWHAAZE00000002exon4274534542745523-
GWHAAZE00000002exon4274487442745043-
GWHAAZE00000002exon4274449842744666-
GWHAAZE00000002exon4274402542744387-
GWHAAZE00000002five_prime_UTR4275135242751478-
GWHAAZE00000002five_prime_UTR4275067042750676-
GWHAAZE00000002CDS4275040442750669-
GWHAAZE00000002CDS4274898442749186-
GWHAAZE00000002CDS4274874042748893-
GWHAAZE00000002CDS4274850842748592-
GWHAAZE00000002CDS4274699642747096-
GWHAAZE00000002CDS4274647142746769-
GWHAAZE00000002CDS4274614942746322-
GWHAAZE00000002CDS4274568142745746-
GWHAAZE00000002CDS4274534542745523-
GWHAAZE00000002CDS4274487442745043-
GWHAAZE00000002CDS4274449842744666-
GWHAAZE00000002CDS4274424442744387-
GWHAAZE00000002three_prime_UTR4274402542744243-
Transcript Sequence

Network for GWHGAAZE007315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01293.21PEPCK_ATP1486158.00E-214
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01610E4.1.1.49, pckA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cyclemap00020
Pyruvate metabolismmap00620
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0006094biological_processgluconeogenesis
GO:0004612molecular_functionphosphoenolpyruvate carboxykinase (ATP) activity
GO:0005524molecular_functionATP binding
GO:0004611molecular_functionphosphoenolpyruvate carboxykinase activity
GO:0017076molecular_functionpurine nucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.753
SRR3591706second leaf4.392
SRR3591707mature leaf6.568
SRR3591708Shoot apex10.017
SRR3591709Stem20.055
SRR3591710White floral bud113.148
SRR3591711White flower240.484
SRR3591712Green floral bud5.342
SRR3591713Yellow flower133.699
SRP173429 SRR8316895Juvenile bud stage 30.330
SRR8316896Juvenile bud stage 73.082
SRR8316897Juvenile bud stage 32.221
SRR8316894Third green stage 20.733
SRR8316900Third green stage 7.852
SRR8316901Third green stage 15.587
SRR8316898Complete white stage 16.604
SRR8316899Complete white stage 10.445
SRR8316903Complete white stage 30.895
SRR8316902Silver flowering stage163.614
SRR8316904Silver flowering stage418.808
SRR8316905Silver flowering stage188.559
SRR8316906Gold flowering stage 362.000
SRR8316907Gold flowering stage 550.917
SRR8316908Gold flowering stage 400.867
SRP132670SRR6706286Control23.448
SRR6706287Light intensity 50%20.476
SRR6706288Light intensity 20%12.393
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.800
CNS0095593Slightly white alabastrum(diploid) 226.720
CNS0095594Slightly white alabastrum(diploid) 334.964
CNS0095595Whole white alabastrum(diploid) 218.956
CNS0095596Whole white alabastrum(diploid) 39.406
CNS0095597Whole white alabastrum(diploid) 413.122
CNS0095598Silvery flower (diploied) 1154.818
CNS0095599Silvery flower (diploied) 2127.952
CNS0095600Silvery flower (diploied) 3245.143
CNS0095601Golden flower (diploid) 164.239
CNS0095602Golden flower (diploid) 2165.233
CNS0095603Golden flower (diploid) 3155.303
CNS0095604Slightly white alabastrum(tetraploid) 111.224
CNS0095605Slightly white alabastrum(tetraploid) 28.459
CNS0095606Slightly white alabastrum(tetraploid) 320.187
CNS0095607Whole white alabastrum(tetraploid) 17.874
CNS0095608Whole white alabastrum(tetraploid) 23.313
CNS0095609Whole white alabastrum(tetraploid) 35.952
CNS0095610Silvery flower (tetraploid) 1474.383
CNS0095611Silvery flower (tetraploid) 2222.821
CNS0095612Silvery flower (tetraploid) 3416.175
CNS0095613Golden flower (tetraploid) 1213.789
CNS0095614Golden flower (tetraploid) 2385.081
CNS0095615Golden flower (tetraploid) 3219.921
CRA001975CRR073297Stem 158.074
CRR073298Stem 281.959
CRR073299Stem 371.162
CRR073300Leaf 116.318
CRR073301Leaf 224.448
CRR073302Leaf 315.338
CRR073303Juvenile bud 116.759
CRR073304Juvenile bud 26.070
CRR073305Juvenile bud 320.895
CRR073306Third green 1516.450
CRR073307Third green 2808.112
CRR073308Third green 3922.783
CRR073309Second white 11027.064
CRR073310Second white 2653.423
CRR073311Second white 3914.448
CRR073312Silver flowering 1786.497
CRR073313Silver flowering 2785.388
CRR073314Silver flowering 3719.953
CRR073315Gold flowering 15.109
CRR073316Gold flowering 28.281
CRR073317Gold flowering 39.369
CRR073318Tawny withering 133.054
CRR073319Tawny withering 234.992
CRR073320Tawny withering 38.810