Detail information of GWHGAAZE007316


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009596780.10PREDICTED: protein RMD5 homolog A-like [Nicotiana tomentosiformis]
trEMBLtr|M1D0R8|M1D0R8_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400078805}
TAIR10AT4G37880.12E-128LisH/CRA/RING-U-box domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4280340142804543+
GWHAAZE00000002mRNA4280340142804543+
GWHAAZE00000002exon4280340142804543+
GWHAAZE00000002CDS4280340142804543+
Transcript Sequence

Network for GWHGAAZE007316

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10607.10CLTH1442845.20E-32
PF13445.7zf-RING_UBOX3223644.80E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf47.121
SRR3591706second leaf23.129
SRR3591707mature leaf25.447
SRR3591708Shoot apex32.694
SRR3591709Stem66.888
SRR3591710White floral bud51.007
SRR3591711White flower61.033
SRR3591712Green floral bud43.931
SRR3591713Yellow flower72.019
SRP173429 SRR8316895Juvenile bud stage 21.325
SRR8316896Juvenile bud stage 28.613
SRR8316897Juvenile bud stage 11.759
SRR8316894Third green stage 13.413
SRR8316900Third green stage 41.325
SRR8316901Third green stage 41.814
SRR8316898Complete white stage 33.625
SRR8316899Complete white stage 76.750
SRR8316903Complete white stage 44.887
SRR8316902Silver flowering stage25.948
SRR8316904Silver flowering stage31.733
SRR8316905Silver flowering stage14.246
SRR8316906Gold flowering stage 55.666
SRR8316907Gold flowering stage 56.848
SRR8316908Gold flowering stage 60.446
SRP132670SRR6706286Control27.295
SRR6706287Light intensity 50%28.851
SRR6706288Light intensity 20%28.578
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.172
CNS0095593Slightly white alabastrum(diploid) 238.181
CNS0095594Slightly white alabastrum(diploid) 332.441
CNS0095595Whole white alabastrum(diploid) 229.493
CNS0095596Whole white alabastrum(diploid) 331.303
CNS0095597Whole white alabastrum(diploid) 434.574
CNS0095598Silvery flower (diploied) 137.494
CNS0095599Silvery flower (diploied) 228.270
CNS0095600Silvery flower (diploied) 352.393
CNS0095601Golden flower (diploid) 130.265
CNS0095602Golden flower (diploid) 250.592
CNS0095603Golden flower (diploid) 350.933
CNS0095604Slightly white alabastrum(tetraploid) 136.168
CNS0095605Slightly white alabastrum(tetraploid) 233.135
CNS0095606Slightly white alabastrum(tetraploid) 356.947
CNS0095607Whole white alabastrum(tetraploid) 126.789
CNS0095608Whole white alabastrum(tetraploid) 228.079
CNS0095609Whole white alabastrum(tetraploid) 338.621
CNS0095610Silvery flower (tetraploid) 151.145
CNS0095611Silvery flower (tetraploid) 251.455
CNS0095612Silvery flower (tetraploid) 363.699
CNS0095613Golden flower (tetraploid) 148.472
CNS0095614Golden flower (tetraploid) 248.916
CNS0095615Golden flower (tetraploid) 380.930
CRA001975CRR073297Stem 141.224
CRR073298Stem 239.362
CRR073299Stem 343.827
CRR073300Leaf 151.909
CRR073301Leaf 259.710
CRR073302Leaf 344.258
CRR073303Juvenile bud 151.561
CRR073304Juvenile bud 255.372
CRR073305Juvenile bud 350.048
CRR073306Third green 158.600
CRR073307Third green 257.124
CRR073308Third green 357.176
CRR073309Second white 155.023
CRR073310Second white 270.145
CRR073311Second white 354.893
CRR073312Silver flowering 158.841
CRR073313Silver flowering 240.849
CRR073314Silver flowering 356.040
CRR073315Gold flowering 140.035
CRR073316Gold flowering 246.811
CRR073317Gold flowering 336.423
CRR073318Tawny withering 151.822
CRR073319Tawny withering 247.947
CRR073320Tawny withering 352.586