Detail information of GWHGAAZE007317


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004231968.10PREDICTED: uncharacterized protein LOC101250463 isoform X2 [Solanum lycopersicum]
trEMBLtr|K4BCW9|K4BCW9_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g091710.2.1}
TAIR10AT4G37890.24E-123Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4280880242811076-
GWHAAZE00000002mRNA4280880242811076-
GWHAAZE00000002exon4281072242811076-
GWHAAZE00000002exon4280880242810538-
GWHAAZE00000002five_prime_UTR4281105842811076-
GWHAAZE00000002CDS4281072242811057-
GWHAAZE00000002CDS4280880242810538-
Transcript Sequence

Network for GWHGAAZE007317

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17123.6zf-RING_111151449.70E-10
PF00092.29VWA3054305.80E-16
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.036
SRR3591706second leaf5.868
SRR3591707mature leaf4.946
SRR3591708Shoot apex15.443
SRR3591709Stem12.310
SRR3591710White floral bud16.726
SRR3591711White flower24.136
SRR3591712Green floral bud14.922
SRR3591713Yellow flower3.665
SRP173429 SRR8316895Juvenile bud stage 6.610
SRR8316896Juvenile bud stage 6.104
SRR8316897Juvenile bud stage 2.055
SRR8316894Third green stage 4.590
SRR8316900Third green stage 14.566
SRR8316901Third green stage 8.590
SRR8316898Complete white stage 7.547
SRR8316899Complete white stage 14.881
SRR8316903Complete white stage 9.276
SRR8316902Silver flowering stage5.412
SRR8316904Silver flowering stage6.042
SRR8316905Silver flowering stage2.850
SRR8316906Gold flowering stage 6.578
SRR8316907Gold flowering stage 3.164
SRR8316908Gold flowering stage 4.049
SRP132670SRR6706286Control32.967
SRR6706287Light intensity 50%27.690
SRR6706288Light intensity 20%27.898
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.248
CNS0095593Slightly white alabastrum(diploid) 25.046
CNS0095594Slightly white alabastrum(diploid) 34.463
CNS0095595Whole white alabastrum(diploid) 24.933
CNS0095596Whole white alabastrum(diploid) 34.341
CNS0095597Whole white alabastrum(diploid) 45.294
CNS0095598Silvery flower (diploied) 112.346
CNS0095599Silvery flower (diploied) 29.661
CNS0095600Silvery flower (diploied) 316.370
CNS0095601Golden flower (diploid) 18.342
CNS0095602Golden flower (diploid) 212.693
CNS0095603Golden flower (diploid) 310.607
CNS0095604Slightly white alabastrum(tetraploid) 16.556
CNS0095605Slightly white alabastrum(tetraploid) 27.900
CNS0095606Slightly white alabastrum(tetraploid) 319.630
CNS0095607Whole white alabastrum(tetraploid) 15.231
CNS0095608Whole white alabastrum(tetraploid) 23.495
CNS0095609Whole white alabastrum(tetraploid) 313.361
CNS0095610Silvery flower (tetraploid) 19.198
CNS0095611Silvery flower (tetraploid) 214.691
CNS0095612Silvery flower (tetraploid) 31.679
CNS0095613Golden flower (tetraploid) 10.832
CNS0095614Golden flower (tetraploid) 25.353
CNS0095615Golden flower (tetraploid) 30.402
CRA001975CRR073297Stem 119.730
CRR073298Stem 217.217
CRR073299Stem 324.379
CRR073300Leaf 114.875
CRR073301Leaf 217.528
CRR073302Leaf 314.968
CRR073303Juvenile bud 121.380
CRR073304Juvenile bud 217.846
CRR073305Juvenile bud 325.133
CRR073306Third green 186.567
CRR073307Third green 244.217
CRR073308Third green 364.794
CRR073309Second white 156.755
CRR073310Second white 268.910
CRR073311Second white 347.415
CRR073312Silver flowering 117.727
CRR073313Silver flowering 219.077
CRR073314Silver flowering 320.132
CRR073315Gold flowering 10.760
CRR073316Gold flowering 21.068
CRR073317Gold flowering 30.809
CRR073318Tawny withering 110.719
CRR073319Tawny withering 22.962
CRR073320Tawny withering 38.522