Detail information of GWHGAAZE007325


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009597687.10PREDICTED: serine hydroxymethyltransferase, mitochondrial isoform X2 [Nicotiana tomentosiformis]
Swissprottr|P50433|GLYM_SOLTU0Serine hydroxymethyltransferase, mitochondrial (Precursor)
trEMBLtr|V4RX53|V4RX53_9ROSI0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}
TAIR10AT4G37930.10serine transhydroxymethyltransferase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4297784242983184-
GWHAAZE00000002mRNA4297784242983184-
GWHAAZE00000002exon4297784242977990-
GWHAAZE00000002exon4297829742978407-
GWHAAZE00000002exon4297849642978607-
GWHAAZE00000002exon4297970042979777-
GWHAAZE00000002exon4297994242980007-
GWHAAZE00000002exon4298018542980289-
GWHAAZE00000002exon4298044642980643-
GWHAAZE00000002exon4298074342980835-
GWHAAZE00000002exon4298092442981016-
GWHAAZE00000002exon4298113742981250-
GWHAAZE00000002exon4298146142981536-
GWHAAZE00000002exon4298190442982025-
GWHAAZE00000002exon4298273642982822-
GWHAAZE00000002exon4298295642983000-
GWHAAZE00000002exon4298309242983184-
GWHAAZE00000002CDS4298309242983184-
GWHAAZE00000002CDS4298295642983000-
GWHAAZE00000002CDS4298273642982822-
GWHAAZE00000002CDS4298190442982025-
GWHAAZE00000002CDS4298146142981536-
GWHAAZE00000002CDS4298113742981250-
GWHAAZE00000002CDS4298092442981016-
GWHAAZE00000002CDS4298074342980835-
GWHAAZE00000002CDS4298044642980643-
GWHAAZE00000002CDS4298018542980289-
GWHAAZE00000002CDS4297994242980007-
GWHAAZE00000002CDS4297970042979777-
GWHAAZE00000002CDS4297849642978607-
GWHAAZE00000002CDS4297829742978407-
GWHAAZE00000002CDS4297784242977990-
Transcript Sequence

Network for GWHGAAZE007325

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00464.20SHMT554486.50E-207
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00600glyA, SHMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0019264biological_processglycine biosynthetic process from serine
GO:0035999biological_processtetrahydrofolate interconversion
GO:0003824molecular_functioncatalytic activity
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf68.009
SRR3591706second leaf996.524
SRR3591707mature leaf1273.784
SRR3591708Shoot apex199.852
SRR3591709Stem75.321
SRR3591710White floral bud15.855
SRR3591711White flower23.823
SRR3591712Green floral bud17.559
SRR3591713Yellow flower39.893
SRP173429 SRR8316895Juvenile bud stage 73.682
SRR8316896Juvenile bud stage 70.760
SRR8316897Juvenile bud stage 51.099
SRR8316894Third green stage 24.085
SRR8316900Third green stage 44.920
SRR8316901Third green stage 46.957
SRR8316898Complete white stage 13.734
SRR8316899Complete white stage 9.776
SRR8316903Complete white stage 33.807
SRR8316902Silver flowering stage60.562
SRR8316904Silver flowering stage84.500
SRR8316905Silver flowering stage49.309
SRR8316906Gold flowering stage 246.155
SRR8316907Gold flowering stage 184.798
SRR8316908Gold flowering stage 185.192
SRP132670SRR6706286Control44.518
SRR6706287Light intensity 50%32.965
SRR6706288Light intensity 20%33.448
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.476
CNS0095593Slightly white alabastrum(diploid) 218.090
CNS0095594Slightly white alabastrum(diploid) 329.677
CNS0095595Whole white alabastrum(diploid) 222.485
CNS0095596Whole white alabastrum(diploid) 324.064
CNS0095597Whole white alabastrum(diploid) 423.824
CNS0095598Silvery flower (diploied) 166.725
CNS0095599Silvery flower (diploied) 271.531
CNS0095600Silvery flower (diploied) 389.556
CNS0095601Golden flower (diploid) 185.108
CNS0095602Golden flower (diploid) 2122.207
CNS0095603Golden flower (diploid) 3114.763
CNS0095604Slightly white alabastrum(tetraploid) 144.890
CNS0095605Slightly white alabastrum(tetraploid) 249.874
CNS0095606Slightly white alabastrum(tetraploid) 340.556
CNS0095607Whole white alabastrum(tetraploid) 133.648
CNS0095608Whole white alabastrum(tetraploid) 234.596
CNS0095609Whole white alabastrum(tetraploid) 343.686
CNS0095610Silvery flower (tetraploid) 185.745
CNS0095611Silvery flower (tetraploid) 292.618
CNS0095612Silvery flower (tetraploid) 3133.649
CNS0095613Golden flower (tetraploid) 1111.016
CNS0095614Golden flower (tetraploid) 2162.745
CNS0095615Golden flower (tetraploid) 3119.666
CRA001975CRR073297Stem 1152.011
CRR073298Stem 2116.946
CRR073299Stem 3158.768
CRR073300Leaf 129.709
CRR073301Leaf 233.258
CRR073302Leaf 323.429
CRR073303Juvenile bud 132.230
CRR073304Juvenile bud 225.431
CRR073305Juvenile bud 317.024
CRR073306Third green 1106.555
CRR073307Third green 270.370
CRR073308Third green 384.332
CRR073309Second white 1152.204
CRR073310Second white 2218.776
CRR073311Second white 3258.823
CRR073312Silver flowering 1216.469
CRR073313Silver flowering 2145.474
CRR073314Silver flowering 3195.243
CRR073315Gold flowering 11561.250
CRR073316Gold flowering 22184.451
CRR073317Gold flowering 31245.972
CRR073318Tawny withering 172.262
CRR073319Tawny withering 2102.443
CRR073320Tawny withering 353.730