Detail information of GWHGAAZE007334


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010274722.10PREDICTED: GDP-L-galactose phosphorylase 1-like [Nelumbo nucifera]
Swissprottr|Q8RWE8|GGAP1_ARATH4E-168GDP-L-galactose phosphorylase 1
trEMBLtr|A0A068U3J1|A0A068U3J1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02699.1}
TAIR10AT4G26850.14E-136mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4340302143406400+
GWHAAZE00000002mRNA4340302143406400+
GWHAAZE00000002exon4340302143403335+
GWHAAZE00000002exon4340400643404191+
GWHAAZE00000002exon4340492443405169+
GWHAAZE00000002exon4340605943406400+
GWHAAZE00000002CDS4340302143403335+
GWHAAZE00000002CDS4340400643404191+
GWHAAZE00000002CDS4340492443405169+
GWHAAZE00000002CDS4340605943406400+
Transcript Sequence

Network for GWHGAAZE007334

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14190VTC2_5 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ascorbate and aldarate metabolismmap00053

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.409
SRR3591706second leaf3.513
SRR3591707mature leaf2.995
SRR3591708Shoot apex4.777
SRR3591709Stem6.241
SRR3591710White floral bud78.218
SRR3591711White flower10.916
SRR3591712Green floral bud15.131
SRR3591713Yellow flower9.794
SRP173429 SRR8316895Juvenile bud stage 2.582
SRR8316896Juvenile bud stage 5.698
SRR8316897Juvenile bud stage 1.977
SRR8316894Third green stage 2.615
SRR8316900Third green stage 10.682
SRR8316901Third green stage 8.488
SRR8316898Complete white stage 1.812
SRR8316899Complete white stage 6.348
SRR8316903Complete white stage 2.356
SRR8316902Silver flowering stage2.540
SRR8316904Silver flowering stage5.138
SRR8316905Silver flowering stage1.452
SRR8316906Gold flowering stage 6.749
SRR8316907Gold flowering stage 5.652
SRR8316908Gold flowering stage 5.301
SRP132670SRR6706286Control8.583
SRR6706287Light intensity 50%9.673
SRR6706288Light intensity 20%10.053
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.744
CNS0095593Slightly white alabastrum(diploid) 211.922
CNS0095594Slightly white alabastrum(diploid) 311.139
CNS0095595Whole white alabastrum(diploid) 214.307
CNS0095596Whole white alabastrum(diploid) 316.307
CNS0095597Whole white alabastrum(diploid) 420.087
CNS0095598Silvery flower (diploied) 18.526
CNS0095599Silvery flower (diploied) 213.889
CNS0095600Silvery flower (diploied) 38.246
CNS0095601Golden flower (diploid) 19.199
CNS0095602Golden flower (diploid) 29.831
CNS0095603Golden flower (diploid) 38.702
CNS0095604Slightly white alabastrum(tetraploid) 115.597
CNS0095605Slightly white alabastrum(tetraploid) 216.627
CNS0095606Slightly white alabastrum(tetraploid) 36.250
CNS0095607Whole white alabastrum(tetraploid) 125.486
CNS0095608Whole white alabastrum(tetraploid) 230.317
CNS0095609Whole white alabastrum(tetraploid) 317.182
CNS0095610Silvery flower (tetraploid) 16.697
CNS0095611Silvery flower (tetraploid) 213.561
CNS0095612Silvery flower (tetraploid) 324.576
CNS0095613Golden flower (tetraploid) 16.181
CNS0095614Golden flower (tetraploid) 27.061
CNS0095615Golden flower (tetraploid) 315.238
CRA001975CRR073297Stem 16.932
CRR073298Stem 26.609
CRR073299Stem 36.620
CRR073300Leaf 110.820
CRR073301Leaf 210.334
CRR073302Leaf 37.064
CRR073303Juvenile bud 124.623
CRR073304Juvenile bud 228.322
CRR073305Juvenile bud 310.164
CRR073306Third green 134.883
CRR073307Third green 237.481
CRR073308Third green 334.558
CRR073309Second white 110.865
CRR073310Second white 214.167
CRR073311Second white 316.839
CRR073312Silver flowering 137.174
CRR073313Silver flowering 245.079
CRR073314Silver flowering 324.185
CRR073315Gold flowering 127.843
CRR073316Gold flowering 27.334
CRR073317Gold flowering 316.007
CRR073318Tawny withering 131.344
CRR073319Tawny withering 228.757
CRR073320Tawny withering 328.678