Gene detail

Detail information of GWHGAAZE007336

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009625375.1	0	PREDICTED: probable fructokinase-4 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9C524\|SCRK6_ARATH	0	Probable fructokinase-6, chloroplastic (Precursor)
trEMBL	tr\|A0A068U357\|A0A068U357_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02702.1}
TAIR10	AT1G66430.1	6E-135	pfkB-like carbohydrate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	43437406	43444019	+
GWHAAZE00000002	mRNA	43437406	43444019	+
GWHAAZE00000002	exon	43437406	43437627	+
GWHAAZE00000002	exon	43440312	43440520	+
GWHAAZE00000002	exon	43441105	43441317	+
GWHAAZE00000002	exon	43441438	43441635	+
GWHAAZE00000002	exon	43441763	43441900	+
GWHAAZE00000002	exon	43442175	43442291	+
GWHAAZE00000002	exon	43443924	43444019	+
GWHAAZE00000002	five_prime_UTR	43437406	43437455	+
GWHAAZE00000002	CDS	43437456	43437627	+
GWHAAZE00000002	CDS	43440312	43440520	+
GWHAAZE00000002	CDS	43441105	43441317	+
GWHAAZE00000002	CDS	43441438	43441635	+
GWHAAZE00000002	CDS	43441763	43441900	+
GWHAAZE00000002	CDS	43442175	43442291	+
GWHAAZE00000002	CDS	43443924	43444019	+

Transcript Sequence
>GWHTAAZE007344 CTGTGTTTCAATTGGTTGTTGTGTGGTAGTGTTGTAAAATATATACATATATGGCTCTTCATTCGGCTGCTTTGTGCTTCGGTGCCGTGTCTTCTAATCCTCGAACTTGCTGGTCGAGTCGGTTCTCTGCTTCGACTCGATTCCGGCGGTGCTCTGTGAATGCATCGGGATTTTCGGTACCGTCATCGTCGCCGGTTTTGTTTCCACAATTTAGACTTCAAGGAAAAGCATTACCAATTGATAACAATCAACCTACGGATGAGCCCTCACTTGTGGTTTGCTTTGGGGAAATGCTTATTGATTTTGTCCCAACCACAAGTGGGCTCTCATTAGCTGAAGCCCCTGCATTTAAAAAGGCTCCTGGTGGTGCACCTGCAAATGTTGCTGTTGGAATATCTCGCCTTGGTGGTTCATCAGCCTTTATTGGGAAGGTTGGTGAAGATGAATTTGGATACATGCTTGCCGAGATTTTAAAGGAGAATAATGTAAACAATGACGGAATGCGCTTTGATCCTGGTGCCCGAACTGCTTTAGCATTTGTTACATTGAGAAAGGACGGGGAACGTGAGTTCATGTTTTATCGCAACCCCAGCGCTGATATGCTGCTTCAAGAAGCTGAACTCGATTTGGCTTTAATTAAGAAGGCGAAGATTTTTCATTTTGGCTCTATAAGTTTGATTACAGAACCATGTAAGTCGGCCCACATTGCTGCAGCAAAAGCTGCAAAGGATGCTGGTGTGCTTTTGTCTTATGATCCCAATCTAAGGCTTCCATTATGGCCATCTGCAGAGAGTGCCAGAGAAGGAATTCTTAGCATATGGGAGACTGCAGATATTATTAAGATAAGCGAAGAGGAGATTACGTTTTTGACAAATGGAGAAGATCCATATGATGATGCTGTTGTCCGTAGGTTATATCATCCAAATCTCAAGTTGCTCCTTGTTACTGAAGGCCCAGATGGTTGCAGGTATTACACCAAGGAGTTCAGCGGGAGAGTTAAAGGATTAAAGGTGGAACCAGTAGATACAACAGGTGCTGGGGATGCTTTTGTAGCTGGAATATTAACACAACTAGCTACTGATGGTTCCTTGCTTCAGCACGAAGAACGACTAAGAGACGCTCTAAGATTCGCAAACGCTTGCGGCGCGTTGACAGTGACTGAGAGGGGGTGCAATCCCAGCTTTGCCAACTAG

Network for GWHGAAZE007336

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00294.25	PfkB	74	376	1.20E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00847	E2.7.1.4, scrK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016301	molecular_function	kinase activity
GO:0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.950
	SRR3591706	second leaf	75.118
	SRR3591707	mature leaf	47.678
	SRR3591708	Shoot apex	50.201
	SRR3591709	Stem	29.098
	SRR3591710	White floral bud	24.889
	SRR3591711	White flower	17.137
	SRR3591712	Green floral bud	51.734
	SRR3591713	Yellow flower	14.846
SRP173429	SRR8316895	Juvenile bud stage	34.337
	SRR8316896	Juvenile bud stage	43.633
	SRR8316897	Juvenile bud stage	24.452
	SRR8316894	Third green stage	25.045
	SRR8316900	Third green stage	83.673
	SRR8316901	Third green stage	71.001
	SRR8316898	Complete white stage	21.697
	SRR8316899	Complete white stage	87.518
	SRR8316903	Complete white stage	21.177
	SRR8316902	Silver flowering stage	7.414
	SRR8316904	Silver flowering stage	8.598
	SRR8316905	Silver flowering stage	4.313
	SRR8316906	Gold flowering stage	12.897
	SRR8316907	Gold flowering stage	11.435
	SRR8316908	Gold flowering stage	12.570
SRP132670	SRR6706286	Control	56.438
	SRR6706287	Light intensity 50%	56.429
	SRR6706288	Light intensity 20%	65.875
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.666
	CNS0095593	Slightly white alabastrum(diploid) 2	44.806
	CNS0095594	Slightly white alabastrum(diploid) 3	29.286
	CNS0095595	Whole white alabastrum(diploid) 2	36.130
	CNS0095596	Whole white alabastrum(diploid) 3	41.402
	CNS0095597	Whole white alabastrum(diploid) 4	37.495
	CNS0095598	Silvery flower (diploied) 1	29.201
	CNS0095599	Silvery flower (diploied) 2	30.063
	CNS0095600	Silvery flower (diploied) 3	18.900
	CNS0095601	Golden flower (diploid) 1	25.669
	CNS0095602	Golden flower (diploid) 2	19.497
	CNS0095603	Golden flower (diploid) 3	19.905
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.992
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.088
	CNS0095606	Slightly white alabastrum(tetraploid) 3	71.782
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.391
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.787
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.847
	CNS0095610	Silvery flower (tetraploid) 1	22.187
	CNS0095611	Silvery flower (tetraploid) 2	29.179
	CNS0095612	Silvery flower (tetraploid) 3	27.726
	CNS0095613	Golden flower (tetraploid) 1	9.316
	CNS0095614	Golden flower (tetraploid) 2	20.696
	CNS0095615	Golden flower (tetraploid) 3	6.813
CRA001975	CRR073297	Stem 1	76.559
	CRR073298	Stem 2	76.624
	CRR073299	Stem 3	78.891
	CRR073300	Leaf 1	93.328
	CRR073301	Leaf 2	96.881
	CRR073302	Leaf 3	107.752
	CRR073303	Juvenile bud 1	118.710
	CRR073304	Juvenile bud 2	107.109
	CRR073305	Juvenile bud 3	103.564
	CRR073306	Third green 1	33.721
	CRR073307	Third green 2	15.963
	CRR073308	Third green 3	21.127
	CRR073309	Second white 1	10.290
	CRR073310	Second white 2	6.865
	CRR073311	Second white 3	4.908
	CRR073312	Silver flowering 1	4.833
	CRR073313	Silver flowering 2	6.300
	CRR073314	Silver flowering 3	5.138
	CRR073315	Gold flowering 1	63.764
	CRR073316	Gold flowering 2	94.902
	CRR073317	Gold flowering 3	72.672
	CRR073318	Tawny withering 1	46.061
	CRR073319	Tawny withering 2	35.498
	CRR073320	Tawny withering 3	48.543