Gene detail

Detail information of GWHGAAZE007353

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI33596.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q42572\|DNLI1_ARATH	3E-170	DNA ligase 1 (Precursor)
trEMBL	tr\|A0A068U2M5\|A0A068U2M5_COFCA	0	DNA ligase {ECO:0000256\|RuleBase:RU000617}
TAIR10	AT1G66730.1	0	DNA LIGASE 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	43742062	43753003	+
GWHAAZE00000002	mRNA	43742062	43753003	+
GWHAAZE00000002	exon	43742062	43743304	+
GWHAAZE00000002	exon	43743408	43743646	+
GWHAAZE00000002	exon	43743763	43744387	+
GWHAAZE00000002	exon	43744805	43744922	+
GWHAAZE00000002	exon	43745065	43745146	+
GWHAAZE00000002	exon	43745634	43745736	+
GWHAAZE00000002	exon	43745837	43745933	+
GWHAAZE00000002	exon	43746677	43746779	+
GWHAAZE00000002	exon	43748932	43749051	+
GWHAAZE00000002	exon	43749353	43749400	+
GWHAAZE00000002	exon	43749589	43749686	+
GWHAAZE00000002	exon	43749808	43749873	+
GWHAAZE00000002	exon	43750085	43750244	+
GWHAAZE00000002	exon	43750415	43750522	+
GWHAAZE00000002	exon	43750853	43750902	+
GWHAAZE00000002	exon	43751106	43751167	+
GWHAAZE00000002	exon	43751252	43751280	+
GWHAAZE00000002	exon	43751369	43751530	+
GWHAAZE00000002	exon	43751638	43751726	+
GWHAAZE00000002	exon	43752310	43752409	+
GWHAAZE00000002	exon	43752707	43753003	+
GWHAAZE00000002	CDS	43742062	43743304	+
GWHAAZE00000002	CDS	43743408	43743646	+
GWHAAZE00000002	CDS	43743763	43744387	+
GWHAAZE00000002	CDS	43744805	43744922	+
GWHAAZE00000002	CDS	43745065	43745146	+
GWHAAZE00000002	CDS	43745634	43745736	+
GWHAAZE00000002	CDS	43745837	43745933	+
GWHAAZE00000002	CDS	43746677	43746779	+
GWHAAZE00000002	CDS	43748932	43749051	+
GWHAAZE00000002	CDS	43749353	43749400	+
GWHAAZE00000002	CDS	43749589	43749686	+
GWHAAZE00000002	CDS	43749808	43749873	+
GWHAAZE00000002	CDS	43750085	43750244	+
GWHAAZE00000002	CDS	43750415	43750522	+
GWHAAZE00000002	CDS	43750853	43750902	+
GWHAAZE00000002	CDS	43751106	43751167	+
GWHAAZE00000002	CDS	43751252	43751280	+
GWHAAZE00000002	CDS	43751369	43751530	+
GWHAAZE00000002	CDS	43751638	43751726	+
GWHAAZE00000002	CDS	43752310	43752409	+
GWHAAZE00000002	CDS	43752707	43753003	+

Transcript Sequence
>GWHTAAZE007361 ATGTCTTCCACAACCCTAACCCTAGATTCCCAATCCCTCTTCGTCACCGCCCTCTCTTCATCCCAATCCCAATCCCCAACCCCTCCCCCTCTCTCATTCTCCCTCCTCTCCAACCACTCTCCTCTCCCTTCATTTCCCTCCAATATCCCCCAATCAAAACTTATCCCCAAAACCCGCTTCATAATCGACGGTTTCAAATTCTCGGGCGATTACTCAATCTCATACTTTCTATCCCACTTCCACGCCGATCACTACACTGGAATCACCTCCAATTGGTCAAAAGGCATCATCTTTTGCTCCAATTCCACTGCTCGGCTTTTAGTTGAAGTGCTTAGGGTTTCAACGCTGTTTGTCTTCCCATTGACGGTATCGGAGTCTGTTTTGATTGATGGATGTGAGGTTTCTCTAATTGACGCTAATCATTGTCCCGGTGCAGTTCAGTTTCTGTTTAAAGTTCCGGTTAGCGGGAAGTTCGAGAGGTATGTGCATACTGGTGATTTTCGGTACCGTAATGATATGAAATTCGAGCCTGTTTTGAGTGAATTTGTTGGTGCTGATGCTGTTTTTTTGGATACTACTTATTGTAATAAGAAATTTGTGTTTCCTTCACAAGAGGAGTCTATCGATTATATAGTTGAGGTGATTGAGAGGATTGGGGTTGAAAATGAGGGTCTATTGAAGTCGGTTTTGTTTGTTGTTGCCACTTATGTTATTGGGAAAGAGAGGATTTTAATTGAGATTTCGCGGAGGTGTAATAGGAAGATACATGTGGATGGGAGAAAAATGGCTATTTTGCGTGTGTTAGGGTTGGGGGAAGAGGGGGTTTTTACCGAGGAAGAAGGGGAAAGTGATGTTTATGTAGTTGGGTGGAATGTGTTAGGTGAGACGTGGCCATACTTTAGACCCAATTTTGTGAAAATGAAGGAGATCATGAATGAGAGAGGGTACTCGAAGATTGTGGGTTTTGTTCCAACAGGATGGACTTATGAAGTACAGCACAGCAAGTTTTCTGTTAGGAAAAAGGATTCACTTGAGATACATCTTGTACCCTATAGTGAACATTCAAACTACGATGAGCTTAGAGAGTATGTCAAGTTTTTAAAACCAAAGCGTGTAATTCCTACAGTAGGTGTTGATGTTGATAAACTTGATAGTAAGCATGCTAATGCAATGCAGAAGCATTTTGCTGGGTTGATTGATGAAATGGCAATCAAACAAGAATTTTTGATGGGTTTTCATCGAGATGATAATGAAATAGAGGAAATATTGGAAGACCTTCGTGACTGTTTGCCCACTTGGGTCACCCGAAATCAGATGTTGGGTCTACTAAGTAGCTCGGGTAGAAATGTTGTTGATGCAGTATCTAATTTTTATGAACACGAAACTGAATTTCATGATCAGGCCGTTGCTAATACATCTTCTGCTTGTTCATCACGGACAAGCTCGTTTAATGAGACTGCATTGCTTTCTGACTCTCGTTCTGACACCCTTATAAGTCAAAGCTGTAAATCAACTATCAAAGTGCGTTCAACTAAGAGCAGCGCTTCTCCTGGGAAAAGGAGGATAAATATTGAGAACAAGCCAAAGAAAAAAGCAAAAACTACTCCAAGCCAAGGATCTGTTGGACCAAAGCAATGTACAATAACAAGATTCTTCAATAAGCTTCAGCCCACTGTCTCCGAAGATAACGAGGTTAGAACCGTGTTAGAGCGATGCAATAATGATAAAAAATTGTTGCCAAGTGACACTATTAAGCCTTACATCAAAGAAGTGGACCAATTTATTCAGATCATAAATGGCAATGAATCATTAAGAAGCCATGCTGCTACAATTTTAGAGGAAACGAAAGGAGATATTAATATGGCACTTGATATGTATTATGGTAACTCTAAGGTTAACCTCAGTGAGGGCAAAGAGAGGTCAATCGAGAGTTGCAAATCAGTCCAAGATCGATGCAGCAGTGGGAATTGCTCTGTTGACAAAGAGACAGGAGTATCAAATGAAATTGGAAATATGGCTGATATCTTTGTGCCTACAAAACCAACAGATGATGCTCCTTTGAACCCTGTATCACTAGCACCTGAGAACTATTCCCCTATAGAACACGCATGCTGGAAACATGGACAGCCTGCTCCATATATACATCTTGCACAGAGTTTTAGCCTGCTTGAGGATGAAAAGGGAAAGATAAAAGCTACATTGATGCTTTGCAATATGTTTAGGAGCTTGCTGGCTTTGTCACCTGGGGATGTTCTACCTGCTGTGTACTTGTGCACAAATAAGATTGCTCCTGACCATGAAAATATGGAACTGAATATTGGTGGAAGTATTGTTATAGCCGCATTGGAAGAGGCGTGTGGGACAAGCAGATCCAGAATTCGGGACCTTTACAACAGCTTAGGGGATCTTGGTGATGTCGCTCAACTTTGCCGACAAACACAATCATTACTTGTTCCTCCGCCACCGCTCACAATCCAAGGTGTATTTTCTGTGCTCCGGAAGATAAGTGTACAAACAGGTAGTGGAAGTACCATTCGAAAGAAAAGTCTTATTGTGAATCTCATGCGGTCATGTAGAGAGAAAGAGATGAAGTTTCTTGTTAGAACTTTGGTTAGGAATCTACGCATTGGGGCCATGATGAGAACGGTTTTGCCAGCATTAGCTCAGGCTGTTGTTATGAACTCCTCTCTTCATGAAGGAAAAAGTGAAAATATGAAGGACCAGCTTCAGGGCCTTTCCGCAGCAGTAGTTGAAGCATATAACATACTCCCTAATCTGGATTTGCTCATTCCTTCGGTCATGGAAAAGGGGCTTCAATTTTCGTCAACGACTTTATCGATGGTTCCAGGCATACCCATCAAGCCCATGCTTGCAAAAATCACTAACGGAATTCCTCAAGTGCTGAAGCTCTTTCAAAACAAAGCTTTTACATGCGAATATAAATATGATGGCCAGCGAGCCCAAATTCACAAACTAGCTGATGGATCTGTACACGTATTTTCTCGAAACGGGGATGAAACAACTTCAAGATTTCCAGATTTGGTAAAAATAATTGAGGAATTGTGTAGTCCTGCTGCAGTAACTTTCATACTGGATGCAGAGGTAGTTGCAGTTGACAGGAAAAATGGCTGCAAGCTTATGTCCTTTCAAGAACTATCTTCTAGAGAGAGAGGGAGTAAGGATTCCTTGATTTCGGTGGATAGCATAAAGGTTGACATATGCATCTATGCCTTTGATATCATGTTTGCTAATGGGGAGCAGCTTTTGGGGTTTCCTCTTCGGCAAAGACGAAAATGTATGCATATTCATTTTCAGACAGGAAGCTATTTTGAATATGCAAAGGAGACAGCAGTGGAAGCAGATTCTGCCTGTGAGACCAGTGAGGAGACTTTGACTAAGATGAATTCTTTTCTTGAAGATGCTCTTCATTCCTCATGCGAAGGAATCATGGTTAAATCTCTTGATGTTGAAGCTGGATACACTCCATCAAAGCGATCTGATACTTGGTTAAAGGTGAAGCGAGATTATGTGGAAGGATTGAATGATTCGTTGGATCTAGTTCCCATCGGTGCTTGGCATGGGAATGGAAGAAAGGCAGGATGGTACAGTCCTTTCCTAATGGCGTGCTACGACCCAGATAATGAAGAATTTCAGAGCGTTTGTCGCGTCATGTCTGGGTTTTCAGATGTCTTCTACAAAGAGATGAAAGAGTTCTACACTGGGGACAAGATCCTTTGCAAAAAGCCACCATACTATCAAACCGCGGAGGTGCCTGATATGTGGTTTTCTCCTGAACTCGTGTGGGAGATAAGGGGGGCTGACTTCACAGTGTCGCCAGTCCATCATGCAGCCATGGGTTTAGTTCATCCATCCCGTGGCATATCCGTCAGATTTCCTAGATTTGTTCGTTCCCTATTAGATCGAAAGCCAGAAGAATGTAGCACAGCCACAGACATAGCCGAAATGTTTCGCTCTCAGACCCGAAAGATGGATGTCTAA

Network for GWHGAAZE007353

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07522.15	DRMBL	275	379	3.00E-18
PF04675.15	DNA_ligase_A_N	712	888	9.10E-37
PF01068.22	DNA_ligase_A_M	955	1173	1.60E-47
PF04679.16	DNA_ligase_A_C	1199	1303	3.50E-20

Protein Sequence

>GWHPAAZE007357
MSSTTLTLDSQSLFVTALSSSQSQSPTPPPLSFSLLSNHSPLPSFPSNIPQSKLIPKTRFIIDGFKFSGDYSISYFLSHFHADHYTGITSNWSKGIIFCSNSTARLLVEVLRVSTLFVFPLTVSESVLIDGCEVSLIDANHCPGAVQFLFKVPVSGKFERYVHTGDFRYRNDMKFEPVLSEFVGADAVFLDTTYCNKKFVFPSQEESIDYIVEVIERIGVENEGLLKSVLFVVATYVIGKERILIEISRRCNRKIHVDGRKMAILRVLGLGEEGVFTEEEGESDVYVVGWNVLGETWPYFRPNFVKMKEIMNERGYSKIVGFVPTGWTYEVQHSKFSVRKKDSLEIHLVPYSEHSNYDELREYVKFLKPKRVIPTVGVDVDKLDSKHANAMQKHFAGLIDEMAIKQEFLMGFHRDDNEIEEILEDLRDCLPTWVTRNQMLGLLSSSGRNVVDAVSNFYEHETEFHDQAVANTSSACSSRTSSFNETALLSDSRSDTLISQSCKSTIKVRSTKSSASPGKRRINIENKPKKKAKTTPSQGSVGPKQCTITRFFNKLQPTVSEDNEVRTVLERCNNDKKLLPSDTIKPYIKEVDQFIQIINGNESLRSHAATILEETKGDINMALDMYYGNSKVNLSEGKERSIESCKSVQDRCSSGNCSVDKETGVSNEIGNMADIFVPTKPTDDAPLNPVSLAPENYSPIEHACWKHGQPAPYIHLAQSFSLLEDEKGKIKATLMLCNMFRSLLALSPGDVLPAVYLCTNKIAPDHENMELNIGGSIVIAALEEACGTSRSRIRDLYNSLGDLGDVAQLCRQTQSLLVPPPPLTIQGVFSVLRKISVQTGSGSTIRKKSLIVNLMRSCREKEMKFLVRTLVRNLRIGAMMRTVLPALAQAVVMNSSLHEGKSENMKDQLQGLSAAVVEAYNILPNLDLLIPSVMEKGLQFSSTTLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLADGSVHVFSRNGDETTSRFPDLVKIIEELCSPAAVTFILDAEVVAVDRKNGCKLMSFQELSSRERGSKDSLISVDSIKVDICIYAFDIMFANGEQLLGFPLRQRRKCMHIHFQTGSYFEYAKETAVEADSACETSEETLTKMNSFLEDALHSSCEGIMVKSLDVEAGYTPSKRSDTWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYDPDNEEFQSVCRVMSGFSDVFYKEMKEFYTGDKILCKKPPYYQTAEVPDMWFSPELVWEIRGADFTVSPVHHAAMGLVHPSRGISVRFPRFVRSLLDRKPEECSTATDIAEMFRSQTRKMDV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10747	LIG1	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Mismatch repair	map03430

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006310	biological_process	DNA recombination
GO:0051103	biological_process	DNA ligation involved in DNA repair
GO:0071897	biological_process	DNA biosynthetic process
GO:0003910	molecular_function	DNA ligase (ATP) activity
GO:0005524	molecular_function	ATP binding
GO:0003909	molecular_function	DNA ligase activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.895
	SRR3591706	second leaf	6.007
	SRR3591707	mature leaf	6.833
	SRR3591708	Shoot apex	6.904
	SRR3591709	Stem	8.824
	SRR3591710	White floral bud	10.755
	SRR3591711	White flower	10.978
	SRR3591712	Green floral bud	9.301
	SRR3591713	Yellow flower	12.139
SRP173429	SRR8316895	Juvenile bud stage	7.407
	SRR8316896	Juvenile bud stage	8.771
	SRR8316897	Juvenile bud stage	4.705
	SRR8316894	Third green stage	4.227
	SRR8316900	Third green stage	8.759
	SRR8316901	Third green stage	9.225
	SRR8316898	Complete white stage	2.906
	SRR8316899	Complete white stage	10.072
	SRR8316903	Complete white stage	7.322
	SRR8316902	Silver flowering stage	3.038
	SRR8316904	Silver flowering stage	6.389
	SRR8316905	Silver flowering stage	2.582
	SRR8316906	Gold flowering stage	7.416
	SRR8316907	Gold flowering stage	7.550
	SRR8316908	Gold flowering stage	8.898
SRP132670	SRR6706286	Control	5.714
	SRR6706287	Light intensity 50%	6.659
	SRR6706288	Light intensity 20%	7.202
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.811
	CNS0095593	Slightly white alabastrum(diploid) 2	5.011
	CNS0095594	Slightly white alabastrum(diploid) 3	5.218
	CNS0095595	Whole white alabastrum(diploid) 2	4.566
	CNS0095596	Whole white alabastrum(diploid) 3	3.332
	CNS0095597	Whole white alabastrum(diploid) 4	5.336
	CNS0095598	Silvery flower (diploied) 1	7.361
	CNS0095599	Silvery flower (diploied) 2	5.755
	CNS0095600	Silvery flower (diploied) 3	6.615
	CNS0095601	Golden flower (diploid) 1	6.160
	CNS0095602	Golden flower (diploid) 2	8.533
	CNS0095603	Golden flower (diploid) 3	8.335
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.696
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.874
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.947
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.589
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.368
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.711
	CNS0095610	Silvery flower (tetraploid) 1	7.738
	CNS0095611	Silvery flower (tetraploid) 2	9.033
	CNS0095612	Silvery flower (tetraploid) 3	8.071
	CNS0095613	Golden flower (tetraploid) 1	5.539
	CNS0095614	Golden flower (tetraploid) 2	9.029
	CNS0095615	Golden flower (tetraploid) 3	8.580
CRA001975	CRR073297	Stem 1	6.603
	CRR073298	Stem 2	6.848
	CRR073299	Stem 3	3.132
	CRR073300	Leaf 1	6.938
	CRR073301	Leaf 2	6.066
	CRR073302	Leaf 3	2.367
	CRR073303	Juvenile bud 1	2.932
	CRR073304	Juvenile bud 2	1.589
	CRR073305	Juvenile bud 3	3.604
	CRR073306	Third green 1	1.068
	CRR073307	Third green 2	0.594
	CRR073308	Third green 3	0.915
	CRR073309	Second white 1	0.698
	CRR073310	Second white 2	1.754
	CRR073311	Second white 3	2.317
	CRR073312	Silver flowering 1	2.221
	CRR073313	Silver flowering 2	1.702
	CRR073314	Silver flowering 3	2.533
	CRR073315	Gold flowering 1	0.853
	CRR073316	Gold flowering 2	2.701
	CRR073317	Gold flowering 3	1.020
	CRR073318	Tawny withering 1	3.118
	CRR073319	Tawny withering 2	4.339
	CRR073320	Tawny withering 3	3.131