Detail information of GWHGAAZE007392


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02779.10unnamed protein product [Coffea canephora]
Swissprottr|Q9XF43|KCS6_ARATH03-ketoacyl-CoA synthase 6
trEMBLtr|A0A068U3P4|A0A068U3P4_COFCA03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}
TAIR10AT1G68530.103-ketoacyl-CoA synthase 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4432137644323736-
GWHAAZE00000002mRNA4432137644323736-
GWHAAZE00000002exon4432137644321903-
GWHAAZE00000002exon4432277444323736-
GWHAAZE00000002CDS4432277444323736-
GWHAAZE00000002CDS4432137644321903-
Transcript Sequence

Network for GWHGAAZE007392

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08392.13FAE1_CUT1_RppA803683.10E-135
PF08541.11ACP_syn_III_C3864652.20E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15397KCS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Fatty acid elongationmap00062
Plant-pathogen interactionmap04626

Gene Ontology

GO term OntologyName
GO:0006633biological_processfatty acid biosynthetic process
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0016747molecular_functiontransferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE007392.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.095
SRR3591706second leaf18.363
SRR3591707mature leaf12.863
SRR3591708Shoot apex11.291
SRR3591709Stem4.999
SRR3591710White floral bud3.040
SRR3591711White flower2.230
SRR3591712Green floral bud12.920
SRR3591713Yellow flower0.410
SRP173429 SRR8316895Juvenile bud stage 15.080
SRR8316896Juvenile bud stage 23.797
SRR8316897Juvenile bud stage 8.151
SRR8316894Third green stage 19.469
SRR8316900Third green stage 51.144
SRR8316901Third green stage 41.460
SRR8316898Complete white stage 0.902
SRR8316899Complete white stage 10.615
SRR8316903Complete white stage 1.215
SRR8316902Silver flowering stage1.094
SRR8316904Silver flowering stage0.859
SRR8316905Silver flowering stage0.046
SRR8316906Gold flowering stage 0.416
SRR8316907Gold flowering stage 0.235
SRR8316908Gold flowering stage 1.173
SRP132670SRR6706286Control27.431
SRR6706287Light intensity 50%30.513
SRR6706288Light intensity 20%36.954
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.160
CNS0095593Slightly white alabastrum(diploid) 23.802
CNS0095594Slightly white alabastrum(diploid) 34.420
CNS0095595Whole white alabastrum(diploid) 24.781
CNS0095596Whole white alabastrum(diploid) 33.835
CNS0095597Whole white alabastrum(diploid) 42.456
CNS0095598Silvery flower (diploied) 18.189
CNS0095599Silvery flower (diploied) 23.410
CNS0095600Silvery flower (diploied) 31.057
CNS0095601Golden flower (diploid) 11.578
CNS0095602Golden flower (diploid) 20.933
CNS0095603Golden flower (diploid) 31.002
CNS0095604Slightly white alabastrum(tetraploid) 119.740
CNS0095605Slightly white alabastrum(tetraploid) 210.236
CNS0095606Slightly white alabastrum(tetraploid) 355.384
CNS0095607Whole white alabastrum(tetraploid) 12.203
CNS0095608Whole white alabastrum(tetraploid) 21.527
CNS0095609Whole white alabastrum(tetraploid) 325.464
CNS0095610Silvery flower (tetraploid) 10.344
CNS0095611Silvery flower (tetraploid) 20.540
CNS0095612Silvery flower (tetraploid) 30.434
CNS0095613Golden flower (tetraploid) 10.280
CNS0095614Golden flower (tetraploid) 20.489
CNS0095615Golden flower (tetraploid) 30.384
CRA001975CRR073297Stem 125.056
CRR073298Stem 224.444
CRR073299Stem 319.462
CRR073300Leaf 127.660
CRR073301Leaf 243.718
CRR073302Leaf 331.565
CRR073303Juvenile bud 18.354
CRR073304Juvenile bud 24.335
CRR073305Juvenile bud 318.680
CRR073306Third green 10.659
CRR073307Third green 20.243
CRR073308Third green 30.699
CRR073309Second white 10.275
CRR073310Second white 20.084
CRR073311Second white 30.171
CRR073312Silver flowering 10.647
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.629
CRR073315Gold flowering 17.359
CRR073316Gold flowering 211.913
CRR073317Gold flowering 313.841
CRR073318Tawny withering 127.451
CRR073319Tawny withering 26.479
CRR073320Tawny withering 339.584