Gene detail

Detail information of GWHGAAZE007394

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004233495.1	0	PREDICTED: ubiquitin receptor RAD23d isoform X1 [Solanum lycopersicum]
Swissprot	tr\|Q84L31\|RD23C_ARATH	2E-173	Ubiquitin receptor RAD23c
trEMBL	tr\|K4B6K0\|K4B6K0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g063130.2.1}
TAIR10	AT3G02540.3	1E-74	Rad23 UV excision repair protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	44366188	44376395	+
GWHAAZE00000002	mRNA	44366188	44376395	+
GWHAAZE00000002	exon	44366188	44366406	+
GWHAAZE00000002	exon	44368154	44368315	+
GWHAAZE00000002	exon	44368666	44368716	+
GWHAAZE00000002	exon	44369785	44369852	+
GWHAAZE00000002	exon	44370418	44370734	+
GWHAAZE00000002	exon	44372276	44372433	+
GWHAAZE00000002	exon	44372724	44372789	+
GWHAAZE00000002	exon	44372878	44372925	+
GWHAAZE00000002	exon	44373837	44373943	+
GWHAAZE00000002	exon	44374082	44374160	+
GWHAAZE00000002	exon	44376279	44376395	+
GWHAAZE00000002	five_prime_UTR	44366188	44366340	+
GWHAAZE00000002	CDS	44366341	44366406	+
GWHAAZE00000002	CDS	44368154	44368315	+
GWHAAZE00000002	CDS	44368666	44368716	+
GWHAAZE00000002	CDS	44369785	44369852	+
GWHAAZE00000002	CDS	44370418	44370734	+
GWHAAZE00000002	CDS	44372276	44372433	+
GWHAAZE00000002	CDS	44372724	44372789	+
GWHAAZE00000002	CDS	44372878	44372925	+
GWHAAZE00000002	CDS	44373837	44373943	+
GWHAAZE00000002	CDS	44374082	44374160	+
GWHAAZE00000002	CDS	44376279	44376395	+

Transcript Sequence
>GWHTAAZE007402 GGCTCGCTCTGGTTTCATGATTTAGGCATTCAGCAACGTGAGAACTCAATTAACTTTTTTATTTTTCCTCTCAAATCTAATTTTTACATAGCCGGCGCCGCCGGAGATCGGAGCTCCGGCCATCATAAAGTCAACGGATAGAAGTTGAAGAAGATGAAGATTTTTGTGAAGACTCTCAAGAACACTCACTTCGAGATCGAAGTGAAACCTGAAGACCCGGTTGCTGATGTAAAGAAGAAGATAGAGGCAGTTCAGGGTGCTGACTTGTACCCTGCTGCCCAACAGATGCTTATCCATTCGGGGAAAGTTCTCAAGGATGCGACAACATTGGAGGAGAACAATGTTGCCGAGAACAGTTTTGTTGTCATTATGCTATCTAAGAGTAAAGTCTCAACGAGCGGAGCATCAACCACATCAACTGCACCATCAAACGTCCAACCTGCAAGTTCTTTGCCACCTTCAGCGCAGCCTTCAACAGCATCTCAAGCTCCTGTGGGGCCCTCGGCAGCAAATGTATATGGTCAAGCAGCATCAAATCTTGTTGCTGGAAGTACATTAGAGACTACCGTTCAACAAATTATTGATATGGGTGGAGGGAGCTGGGATCGGGACACAGTTATCCGTGCACTGCGTGCTGCATACAACAATCCGGAGAGAGCTGTTGAATATCTATATTCTGTGAGTTCACACACTAGTTTCTTGGTTTCTATCCCCGTTGGATCAGCTTATTGTTGGATTCAGGTTGTCCTTGGCTTGGATTGCTTGCCCACTTCTGCAATAAGGTGGACTAAATCTGAATTGGTTTTGTGGATGCAGATAGAAAACAAACTCATGAAGGGTATTCCCGAGCAAGCTGAAGTTCCACCTGTCGCCCAAGCTCCTGCTGCTAGGCAAGCCATAAATCCTCCAGCTCAGGCTCCTCAGCCAGTGGCGTCCAGCGGACCCAATGCAAACCCACTTGATCTTTTTCCTCAGGGTCTTCCAAATGTGGGATCGAATGCCGGCGCAGGCAACTTGGATTTTCTACGCAACAGTCAACAGTTCCAAGCCTTGCGAGATATGGTGCAAGCCAATCCTCAAATCTTGCAGCCGATGCTTCAGGAGCTTGGAAAGCAAAATCCAAACCTGATGCGCCTCATCCAAGAGCATCAGGCAGATTTTCTACGCTTGATCAATGAACCTGTTGAAGGTGGAGGGAACATTCCGGGCCAACTGGCTGGAGCAATGCCACAGTCTGTGACCGTCACACCTGAAGAGCGCGAGGCAATTGAACGCCTTGAAGCGATGGGTTTCGAACGAGCTCTAGTACTGGAGGTATTTTTCGCATGCAACAAGAACGAGGAGTTGGCTGCAAACTACCTTTTAGATCACATGCACGAGTTTGATGACTAA

Network for GWHGAAZE007394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0182

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	3	76	3.30E-19
PF00627.32	UBA	136	173	9.20E-14
PF09280.12	XPC-binding	288	343	2.10E-22
PF00627.32	UBA	368	403	6.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10839	RAD23, HR23	Protein processing in endoplasmic reticulum	map04141
K10839	RAD23, HR23	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006289	biological_process	nucleotide-excision repair
GO:0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005634	cellular_component	nucleus
GO:0003684	molecular_function	damaged DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	118.450
	SRR3591706	second leaf	66.831
	SRR3591707	mature leaf	59.252
	SRR3591708	Shoot apex	104.699
	SRR3591709	Stem	114.558
	SRR3591710	White floral bud	107.855
	SRR3591711	White flower	123.808
	SRR3591712	Green floral bud	75.775
	SRR3591713	Yellow flower	106.705
SRP173429	SRR8316895	Juvenile bud stage	60.584
	SRR8316896	Juvenile bud stage	81.125
	SRR8316897	Juvenile bud stage	41.165
	SRR8316894	Third green stage	26.014
	SRR8316900	Third green stage	63.248
	SRR8316901	Third green stage	75.191
	SRR8316898	Complete white stage	43.937
	SRR8316899	Complete white stage	99.866
	SRR8316903	Complete white stage	59.298
	SRR8316902	Silver flowering stage	54.950
	SRR8316904	Silver flowering stage	67.208
	SRR8316905	Silver flowering stage	33.000
	SRR8316906	Gold flowering stage	91.541
	SRR8316907	Gold flowering stage	96.059
	SRR8316908	Gold flowering stage	102.418
SRP132670	SRR6706286	Control	76.539
	SRR6706287	Light intensity 50%	73.411
	SRR6706288	Light intensity 20%	71.224
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	70.405
	CNS0095593	Slightly white alabastrum(diploid) 2	64.308
	CNS0095594	Slightly white alabastrum(diploid) 3	68.937
	CNS0095595	Whole white alabastrum(diploid) 2	52.747
	CNS0095596	Whole white alabastrum(diploid) 3	51.345
	CNS0095597	Whole white alabastrum(diploid) 4	45.288
	CNS0095598	Silvery flower (diploied) 1	81.967
	CNS0095599	Silvery flower (diploied) 2	71.950
	CNS0095600	Silvery flower (diploied) 3	102.917
	CNS0095601	Golden flower (diploid) 1	68.368
	CNS0095602	Golden flower (diploid) 2	100.829
	CNS0095603	Golden flower (diploid) 3	96.132
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.542
	CNS0095605	Slightly white alabastrum(tetraploid) 2	65.294
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.569
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.226
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.737
	CNS0095609	Whole white alabastrum(tetraploid) 3	69.554
	CNS0095610	Silvery flower (tetraploid) 1	109.771
	CNS0095611	Silvery flower (tetraploid) 2	102.605
	CNS0095612	Silvery flower (tetraploid) 3	123.300
	CNS0095613	Golden flower (tetraploid) 1	87.627
	CNS0095614	Golden flower (tetraploid) 2	96.858
	CNS0095615	Golden flower (tetraploid) 3	95.202
CRA001975	CRR073297	Stem 1	120.345
	CRR073298	Stem 2	114.356
	CRR073299	Stem 3	154.409
	CRR073300	Leaf 1	99.640
	CRR073301	Leaf 2	112.588
	CRR073302	Leaf 3	116.712
	CRR073303	Juvenile bud 1	119.981
	CRR073304	Juvenile bud 2	98.347
	CRR073305	Juvenile bud 3	127.237
	CRR073306	Third green 1	172.013
	CRR073307	Third green 2	173.179
	CRR073308	Third green 3	144.423
	CRR073309	Second white 1	161.943
	CRR073310	Second white 2	150.294
	CRR073311	Second white 3	120.896
	CRR073312	Silver flowering 1	139.658
	CRR073313	Silver flowering 2	171.962
	CRR073314	Silver flowering 3	143.514
	CRR073315	Gold flowering 1	86.738
	CRR073316	Gold flowering 2	100.621
	CRR073317	Gold flowering 3	99.454
	CRR073318	Tawny withering 1	188.647
	CRR073319	Tawny withering 2	159.358
	CRR073320	Tawny withering 3	203.021