Gene detail

Detail information of GWHGAAZE007408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273758.1	0	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X4 [Vitis vinifera]
Swissprot	tr\|Q944K2\|OST48_ARATH	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit (Precursor)
trEMBL	tr\|D7SPJ2\|D7SPJ2_VITVI	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit {ECO:0000256\|RuleBase:RU361142}
TAIR10	AT5G66680.1	2E-133	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	44757605	44764412	-
GWHAAZE00000002	mRNA	44757605	44764412	-
GWHAAZE00000002	exon	44764081	44764412	-
GWHAAZE00000002	exon	44762898	44763034	-
GWHAAZE00000002	exon	44761938	44762063	-
GWHAAZE00000002	exon	44761502	44761555	-
GWHAAZE00000002	exon	44761248	44761361	-
GWHAAZE00000002	exon	44759538	44759593	-
GWHAAZE00000002	exon	44759413	44759454	-
GWHAAZE00000002	exon	44758981	44759056	-
GWHAAZE00000002	exon	44758831	44758902	-
GWHAAZE00000002	exon	44758600	44758725	-
GWHAAZE00000002	exon	44758409	44758513	-
GWHAAZE00000002	exon	44757605	44757652	-
GWHAAZE00000002	five_prime_UTR	44764343	44764412	-
GWHAAZE00000002	CDS	44764081	44764342	-
GWHAAZE00000002	CDS	44762898	44763034	-
GWHAAZE00000002	CDS	44761938	44762063	-
GWHAAZE00000002	CDS	44761502	44761555	-
GWHAAZE00000002	CDS	44761248	44761361	-
GWHAAZE00000002	CDS	44759538	44759593	-
GWHAAZE00000002	CDS	44759413	44759454	-
GWHAAZE00000002	CDS	44758981	44759056	-
GWHAAZE00000002	CDS	44758831	44758902	-
GWHAAZE00000002	CDS	44758600	44758725	-
GWHAAZE00000002	CDS	44758409	44758513	-
GWHAAZE00000002	CDS	44757605	44757652	-

Transcript Sequence
>GWHTAAZE007416 TCAGGTTTGAAGGCTTTAAGAAGCCCTACTACAGTTTACAGTTTCGTACCTCAAAAACCCTAATTTAGTAATGGCGAATCTCTCTATGATCACATTGATCTCACTTCTCTCCATAATCGGCTACTCATTCTCTCTAGAAAATCCCGTGGATGATCGCATTTTAGTTGTGCTCGATGATTGGGCCCTCAAATCATCGCACTCGATCTTCTTCGATTCTCTTCAAAATCGCGGATGCGATCTCGATTTCAAGCTCGCTACTGATAAGATCGCGTTGCAGAGATACGGACAGTATTTGTACGATGCTTTGATCCTGTTTTGCCCTACCAATGAGCGAATTGAAGCAAATTTGGATGTGGAGGCAGTTTTGGATTTCGTTGATTCAGGCCATGATTTGATTTTAGCAGCCGATGCTAGTGCATCCGATTGGATCCGGAACATTGCTGCGGAGAGTGGAGTTGATTTCGATGAGGAATCATCTGCGATGGTTATCGATCATATTAACTATGCAGTCTCAGAAACCGAGGGAGATCATTCATTGATTGCATCTGGTGATTTCATTCAATCTGATGTGATTTTGGGAAGTACAAAAATTGAGGCTCCTGTATTGTTCAAAGGGATTGGGCATACAATAAATCCAGCAAATAGCTTGGCTTTGAAGGTTCTTTCAGCTTCTTCTTCAGCATATTCTGCTAACCCAAATTCCAAGCTGTTAACTCCACCATCCCTTGCTGCGTCTGCTATCTCTTTGGTTTCAGTTGTGCAGGCTAGGAACAATGCAAGGATTATGATCTCTGGCTCTTTAAGTATTTTCAGCAATAGATTCTTCAAATCAAGTGTGCAAAAGGCTGGGAGCTCAAATAGATATGTAAAATCTGGCAATGAACAATTTGTGACTGAACTTAGCAAATGGGTTTTCCATGAAAGGGGCCATCTGAGGGCTGTCAATGTTGGACACCACAAACTTGGGGAAACAGATGAACCTGCAATATACAGGATCAACGATGACCTGCATTACTCCTTAGAGATCTTTGAATGGTCTGGAACAAAGTGGGAACCGTACTTTGCTAATGATGTTCAGGTGCAGTTCTACATGATGAGTCCCTATGTGTTAAAGACTTTGTCCACCGATAAAAAGGGTCATTATTTTGCTAGGTTTAAAGTACCAGATGTTTACGGGGTTTTCCAGTTCAAGGTTGAGTATAAGAGGCTTGGATACACTAGCTTATCGCTTTCAAAACAGATGGCTGGCTTCTTTGTCTTCACTGTTGTGTACCTCTACAGCAAGTAA

Network for GWHGAAZE007408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03345.15	DDOST_48kD	30	391	2.80E-103

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12670	WBP1	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0018279	biological_process	protein N-linked glycosylation via asparagine
GO:0005789	cellular_component	endoplasmic reticulum membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.262
	SRR3591706	second leaf	12.385
	SRR3591707	mature leaf	8.498
	SRR3591708	Shoot apex	26.318
	SRR3591709	Stem	16.228
	SRR3591710	White floral bud	15.988
	SRR3591711	White flower	13.994
	SRR3591712	Green floral bud	45.899
	SRR3591713	Yellow flower	6.889
SRP173429	SRR8316895	Juvenile bud stage	34.278
	SRR8316896	Juvenile bud stage	73.203
	SRR8316897	Juvenile bud stage	29.443
	SRR8316894	Third green stage	26.782
	SRR8316900	Third green stage	61.673
	SRR8316901	Third green stage	65.835
	SRR8316898	Complete white stage	5.142
	SRR8316899	Complete white stage	18.744
	SRR8316903	Complete white stage	7.762
	SRR8316902	Silver flowering stage	1.874
	SRR8316904	Silver flowering stage	3.809
	SRR8316905	Silver flowering stage	1.277
	SRR8316906	Gold flowering stage	3.167
	SRR8316907	Gold flowering stage	4.324
	SRR8316908	Gold flowering stage	3.345
SRP132670	SRR6706286	Control	24.079
	SRR6706287	Light intensity 50%	26.815
	SRR6706288	Light intensity 20%	27.038
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.960
	CNS0095593	Slightly white alabastrum(diploid) 2	43.648
	CNS0095594	Slightly white alabastrum(diploid) 3	66.082
	CNS0095595	Whole white alabastrum(diploid) 2	48.729
	CNS0095596	Whole white alabastrum(diploid) 3	69.777
	CNS0095597	Whole white alabastrum(diploid) 4	36.315
	CNS0095598	Silvery flower (diploied) 1	10.212
	CNS0095599	Silvery flower (diploied) 2	10.642
	CNS0095600	Silvery flower (diploied) 3	6.683
	CNS0095601	Golden flower (diploid) 1	7.924
	CNS0095602	Golden flower (diploid) 2	7.521
	CNS0095603	Golden flower (diploid) 3	6.022
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.315
	CNS0095605	Slightly white alabastrum(tetraploid) 2	73.623
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.921
	CNS0095607	Whole white alabastrum(tetraploid) 1	46.326
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.560
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.231
	CNS0095610	Silvery flower (tetraploid) 1	6.401
	CNS0095611	Silvery flower (tetraploid) 2	5.179
	CNS0095612	Silvery flower (tetraploid) 3	4.129
	CNS0095613	Golden flower (tetraploid) 1	2.828
	CNS0095614	Golden flower (tetraploid) 2	4.392
	CNS0095615	Golden flower (tetraploid) 3	1.728
CRA001975	CRR073297	Stem 1	34.184
	CRR073298	Stem 2	30.282
	CRR073299	Stem 3	30.187
	CRR073300	Leaf 1	26.629
	CRR073301	Leaf 2	29.161
	CRR073302	Leaf 3	36.802
	CRR073303	Juvenile bud 1	27.429
	CRR073304	Juvenile bud 2	18.513
	CRR073305	Juvenile bud 3	17.906
	CRR073306	Third green 1	3.203
	CRR073307	Third green 2	1.474
	CRR073308	Third green 3	1.913
	CRR073309	Second white 1	1.122
	CRR073310	Second white 2	0.898
	CRR073311	Second white 3	0.372
	CRR073312	Silver flowering 1	1.310
	CRR073313	Silver flowering 2	1.697
	CRR073314	Silver flowering 3	0.496
	CRR073315	Gold flowering 1	3.878
	CRR073316	Gold flowering 2	5.281
	CRR073317	Gold flowering 3	5.059
	CRR073318	Tawny withering 1	10.237
	CRR073319	Tawny withering 2	10.504
	CRR073320	Tawny withering 3	14.504