Gene detail

Detail information of GWHGAAZE007430

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009792124.1	PREDICTED: ATP-dependent DNA helicase DDM1 isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9XFH4\|DDM1_ARATH	ATP-dependent DNA helicase DDM1
trEMBL	tr\|A0A061DFU2\|A0A061DFU2_THECC	Chromatin remodeling 1 isoform 1 {ECO:0000313\|EMBL:EOX91120.1}
TAIR10	AT5G66750.1	chromatin remodeling 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	45222288	45228931	+
GWHAAZE00000002	mRNA	45222288	45228931	+
GWHAAZE00000002	exon	45222288	45222580	+
GWHAAZE00000002	exon	45223232	45223792	+
GWHAAZE00000002	exon	45224161	45224350	+
GWHAAZE00000002	exon	45224486	45224661	+
GWHAAZE00000002	exon	45225607	45225676	+
GWHAAZE00000002	exon	45225759	45225948	+
GWHAAZE00000002	exon	45226033	45226128	+
GWHAAZE00000002	exon	45226221	45226327	+
GWHAAZE00000002	exon	45226428	45226547	+
GWHAAZE00000002	exon	45227180	45227299	+
GWHAAZE00000002	exon	45227563	45227661	+
GWHAAZE00000002	exon	45227748	45227849	+
GWHAAZE00000002	exon	45228692	45228931	+
GWHAAZE00000002	CDS	45222288	45222580	+
GWHAAZE00000002	CDS	45223232	45223792	+
GWHAAZE00000002	CDS	45224161	45224350	+
GWHAAZE00000002	CDS	45224486	45224661	+
GWHAAZE00000002	CDS	45225607	45225676	+
GWHAAZE00000002	CDS	45225759	45225948	+
GWHAAZE00000002	CDS	45226033	45226128	+
GWHAAZE00000002	CDS	45226221	45226327	+
GWHAAZE00000002	CDS	45226428	45226547	+
GWHAAZE00000002	CDS	45227180	45227299	+
GWHAAZE00000002	CDS	45227563	45227661	+
GWHAAZE00000002	CDS	45227748	45227849	+
GWHAAZE00000002	CDS	45228692	45228931	+

Transcript Sequence
>GWHTAAZE007438 GACGTGTGCAACGAAAAACACGCAGTCAAGTTGGAGGAAGAAGTGGTTCTTGATGCAAAAAATGGGGATTCTTCTCTTATATCAAAAGCCATGACAGAGGTGGAAGAGAAACTTCTGGAAGAGCGAGTCAAGGAAGAGGAGGGAGTGAATGGGGTTGACAAGGCACCTCACTTGAATGACACCCAGTTCACTAAATTGGATGAGCTTCTAACACAGACCCAACTCTACTCAGAGTTCTTGCTGGAAAAGATGGATGACATCACAGCTGTATCATCTTATATCTCCTTTCTGATGTGGGTTGATAGGCGGGCGGGGAGGGGTGGGGGTGGTGCCAGGCATGCTAATTGGCTAGAAAGTGCTTGTCCTTTTCCTTTCCATGACTCTGGCTCTCATTCTACTATTAAGAACATACAGTGTCTTTCTCATGGTTACATATATTTCTTAAATGATATTTTCTTTTATGTATTTTGGCAAGCTTTACCATGCCTGAAAGTGATACTTTTTCAGAACAAGGCCAAGAGAGCTGTAGCGGCTATGCTTACAAGATCTAAAGAGGGTACTGCTTCTGAAGATGCAAGCCTCAGCAAGGAAGAGAGAGCTGAGAAGGAGCAGGCCGAACTTGTACCATTATTGACTGGTGGGAAGTTGAAGCCTTATCAACTTAAAGGTGTCAAATGGCTGATCTCGTTATGGCAAAATGGACTGAATGGGATCCTTGCAGATCAAATGGGGCTTGGAAAAACTATCCAGACAATTGGTTTTCTTGCTCATCTAAAAGGGAATGGTTTGGATGGTCCGTACATGGTCATCGCTCCTCTTTCTACTCTCTCAAATTGGGTGAATGAGATATCCAGGTTTGTGCCATCAATCAATTCAGTTATCTACCATGGTGATAAGAAAGAGAGGGATGAGATAAGGAGGAAGCACATGCCCAAAACAATAGGCCCCAAATTCCCCATTGTAATTACTTCTTACGAGGTCGCAATGAATGATGCCAAAAAACACTTGAGGCATTACAATTGGAAATACGTTGTGGTCGATGAGGGACACAGGTTGAAAAACTCACAATGCAAATTACTAAAGGAGTTGAAATACTTACCAGTTGAAAATAAGCTTCTGTTAACGGGGACACCTCTGCAGAACAATTTGGCAGAGCTCTGGTCATTGCTGAACTTCATTTTGCCTGATATATTTTCGTCTCATGAGGAATTTGAGTCATGGTTTGATCTATCTGGGAAGTGCAACAATGATACAAGGAAGGAAGAAATGGAAGAGAAGAGAAGGACACAAGTGGTAGCAAAACTCCATGGGATATTGCGTCCCTTTCTTCTTCGAAGAATGAAAGAAGATGTTGAGCTGTCACTTCCCCGGAAGAAAGAGATCATCCTATATGCTACAGTGACTGAGCATCAAAAGAACTTCCAGGATCACCTTGTTAATAAGACTTTGGAGGAATATCTGCGAGAGAAAGTGGACACTGGACGCGCTGTGAAAGGAAAGCTTAATAATTTGATGATTCAACTTCGGAAGAACTGCAACCACCCTGACCTCTTAGAGTCGGCCTTTGACGGCTCTTATTTCTATCCGCCTGTAGAACAGATAGTTGAACAGTGTGGAAAGTTTCGCTTGCTGGACAGATTACTTGCAAAGCTGTTTGCACGCAATCACAAAGTACACCTTACAGTACTGGTCTTTTCCCAGTGGACTAAGATTTTAGATATAATGCATTACTATTTTAGTGAGAAGGGGTTTGAAGTTTGTAGGATTGACGGCAGTGTGAAATTGGATGAGAGAAAAAGACAGATCCAGGAGTTCAATGATTTGAACAGCGAATACAAAATATTTCTTCTCAGTACTAGAGCTGGTGGACTTGGTATTAATCTTACTGCAGCAGATACCTGCATTTTATATGATAGCGACTGGAATCCTCAAATGGATTTACAGGCTATGGATCGTTGTCATAGAATAGGTCAGACAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCTCAATCTGTAGAGGGTCGAATTCTGAAAAGAGCCTTTAGTAAGTTGAAGCTTGAGCACGTGGTTATTGGGAAAGGTCAGTTTAAGCAAGAAAGAACCAAGACAGATGACACGCAGGAAGAGGACTTACTGGCACTACTTAGAGATGAAGAAGATGCGGAAGACAAGATGATACAGACGGACATAAGTGATGAAGATCTAGAGAGGGTGTTGGACCGCAGCGATCTGGTTGCTGGTCCGACAAGTACAGATGGAAAACCTGATTTCGCTGCAAGTCTTCTTCCCCTCAAGGGCCCTGGCTGGGAGGTGGTTATCCCCACTGCGAGTGGAGGCATGCTTTCCACCCTCAACAGTTAG

Network for GWHGAAZE007430

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.24	SNF2_N	218	517	1.20E-65
PF00271.32	Helicase_C	548	657	6.70E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.074
	SRR3591706	second leaf	4.353
	SRR3591707	mature leaf	3.557
	SRR3591708	Shoot apex	28.816
	SRR3591709	Stem	5.690
	SRR3591710	White floral bud	3.885
	SRR3591711	White flower	4.702
	SRR3591712	Green floral bud	4.367
	SRR3591713	Yellow flower	1.724
SRP173429	SRR8316895	Juvenile bud stage	7.804
	SRR8316896	Juvenile bud stage	10.096
	SRR8316897	Juvenile bud stage	4.504
	SRR8316894	Third green stage	3.341
	SRR8316900	Third green stage	6.031
	SRR8316901	Third green stage	5.902
	SRR8316898	Complete white stage	0.990
	SRR8316899	Complete white stage	8.130
	SRR8316903	Complete white stage	1.941
	SRR8316902	Silver flowering stage	0.643
	SRR8316904	Silver flowering stage	1.144
	SRR8316905	Silver flowering stage	0.835
	SRR8316906	Gold flowering stage	1.564
	SRR8316907	Gold flowering stage	1.594
	SRR8316908	Gold flowering stage	1.310
SRP132670	SRR6706286	Control	5.034
	SRR6706287	Light intensity 50%	5.634
	SRR6706288	Light intensity 20%	5.726
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.886
	CNS0095593	Slightly white alabastrum(diploid) 2	6.194
	CNS0095594	Slightly white alabastrum(diploid) 3	5.338
	CNS0095595	Whole white alabastrum(diploid) 2	3.926
	CNS0095596	Whole white alabastrum(diploid) 3	2.548
	CNS0095597	Whole white alabastrum(diploid) 4	3.035
	CNS0095598	Silvery flower (diploied) 1	8.978
	CNS0095599	Silvery flower (diploied) 2	9.859
	CNS0095600	Silvery flower (diploied) 3	4.125
	CNS0095601	Golden flower (diploid) 1	6.914
	CNS0095602	Golden flower (diploid) 2	3.235
	CNS0095603	Golden flower (diploid) 3	4.741
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.792
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.398
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.176
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.084
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.536
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.219
	CNS0095610	Silvery flower (tetraploid) 1	2.349
	CNS0095611	Silvery flower (tetraploid) 2	2.248
	CNS0095612	Silvery flower (tetraploid) 3	0.827
	CNS0095613	Golden flower (tetraploid) 1	0.454
	CNS0095614	Golden flower (tetraploid) 2	0.922
	CNS0095615	Golden flower (tetraploid) 3	0.112
CRA001975	CRR073297	Stem 1	9.393
	CRR073298	Stem 2	9.129
	CRR073299	Stem 3	8.141
	CRR073300	Leaf 1	5.007
	CRR073301	Leaf 2	4.465
	CRR073302	Leaf 3	4.652
	CRR073303	Juvenile bud 1	3.256
	CRR073304	Juvenile bud 2	1.446
	CRR073305	Juvenile bud 3	4.762
	CRR073306	Third green 1	0.257
	CRR073307	Third green 2	0.452
	CRR073308	Third green 3	0.281
	CRR073309	Second white 1	0.255
	CRR073310	Second white 2	0.480
	CRR073311	Second white 3	0.513
	CRR073312	Silver flowering 1	0.026
	CRR073313	Silver flowering 2	0.113
	CRR073314	Silver flowering 3	0.317
	CRR073315	Gold flowering 1	2.795
	CRR073316	Gold flowering 2	2.521
	CRR073317	Gold flowering 3	1.062
	CRR073318	Tawny withering 1	6.782
	CRR073319	Tawny withering 2	5.575
	CRR073320	Tawny withering 3	7.674