Detail information of GWHGAAZE007433


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010113457.16.16121E-19AP-3 complex subunit sigma [Morus notabilis]
Swissprottr|Q8VZ37|AP3S_ARATH9E-21AP-3 complex subunit sigma
trEMBLtr|W9SDA5|W9SDA5_9ROSA2E-19AP-3 complex subunit sigma {ECO:0000313|EMBL:EXC35484.1}
TAIR10AT3G50860.16E-17Clathrin adaptor complex small chain family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4529369245293987-
GWHAAZE00000002mRNA4529369245293987-
GWHAAZE00000002exon4529369245293764-
GWHAAZE00000002exon4529383345293987-
GWHAAZE00000002CDS4529383345293987-
GWHAAZE00000002CDS4529369245293764-
Transcript Sequence

Network for GWHGAAZE007433

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01217.21Clat_adaptor_s12433.50E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12399AP3S Lysosome map04142

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.002
SRR3591706second leaf1.828
SRR3591707mature leaf2.404
SRR3591708Shoot apex0.676
SRR3591709Stem6.624
SRR3591710White floral bud1.861
SRR3591711White flower3.347
SRR3591712Green floral bud8.774
SRR3591713Yellow flower1.704
SRP173429 SRR8316895Juvenile bud stage 0.929
SRR8316896Juvenile bud stage 0.946
SRR8316897Juvenile bud stage 0.840
SRR8316894Third green stage 1.488
SRR8316900Third green stage 2.457
SRR8316901Third green stage 3.930
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 2.600
SRR8316903Complete white stage 0.770
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.176
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.035
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.724
CNS0095593Slightly white alabastrum(diploid) 25.123
CNS0095594Slightly white alabastrum(diploid) 34.761
CNS0095595Whole white alabastrum(diploid) 26.911
CNS0095596Whole white alabastrum(diploid) 38.010
CNS0095597Whole white alabastrum(diploid) 45.800
CNS0095598Silvery flower (diploied) 13.937
CNS0095599Silvery flower (diploied) 23.114
CNS0095600Silvery flower (diploied) 30.951
CNS0095601Golden flower (diploid) 16.011
CNS0095602Golden flower (diploid) 22.119
CNS0095603Golden flower (diploid) 31.698
CNS0095604Slightly white alabastrum(tetraploid) 18.013
CNS0095605Slightly white alabastrum(tetraploid) 27.196
CNS0095606Slightly white alabastrum(tetraploid) 31.824
CNS0095607Whole white alabastrum(tetraploid) 17.415
CNS0095608Whole white alabastrum(tetraploid) 28.059
CNS0095609Whole white alabastrum(tetraploid) 33.372
CNS0095610Silvery flower (tetraploid) 10.512
CNS0095611Silvery flower (tetraploid) 20.792
CNS0095612Silvery flower (tetraploid) 30.648
CNS0095613Golden flower (tetraploid) 10.620
CNS0095614Golden flower (tetraploid) 20.266
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.116
CRR073298Stem 20.087
CRR073299Stem 30.226
CRR073300Leaf 10.092
CRR073301Leaf 20.418
CRR073302Leaf 30.269
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.098
CRR073305Juvenile bud 30.003
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.015
CRR073316Gold flowering 20.000
CRR073317Gold flowering 31.646
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.001
CRR073320Tawny withering 30.204