Detail information of GWHGAAZE007436


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002267514.10PREDICTED: vam6/Vps39-like protein [Vitis vinifera]
trEMBLtr|F6GWW4|F6GWW4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB44450.1}
TAIR10AT4G36630.10Vacuolar sorting protein 39

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4530104845310751-
GWHAAZE00000002mRNA4530104845310751-
GWHAAZE00000002exon4530104845301248-
GWHAAZE00000002exon4530208545302183-
GWHAAZE00000002exon4530273745303192-
GWHAAZE00000002exon4530381145304053-
GWHAAZE00000002exon4530435345304574-
GWHAAZE00000002exon4530532645305655-
GWHAAZE00000002exon4530664945307075-
GWHAAZE00000002exon4530773745307849-
GWHAAZE00000002exon4530792745308070-
GWHAAZE00000002exon4530817045308301-
GWHAAZE00000002exon4530908245309293-
GWHAAZE00000002exon4531030145310751-
GWHAAZE00000002five_prime_UTR4531074345310751-
GWHAAZE00000002CDS4531030145310742-
GWHAAZE00000002CDS4530908245309293-
GWHAAZE00000002CDS4530817045308301-
GWHAAZE00000002CDS4530792745308070-
GWHAAZE00000002CDS4530773745307849-
GWHAAZE00000002CDS4530664945307075-
GWHAAZE00000002CDS4530532645305655-
GWHAAZE00000002CDS4530435345304574-
GWHAAZE00000002CDS4530381145304053-
GWHAAZE00000002CDS4530273745303192-
GWHAAZE00000002CDS4530208545302183-
GWHAAZE00000002CDS4530104845301248-
Transcript Sequence

Network for GWHGAAZE007436

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00780.23CNH1122864.80E-20
PF10366.10Vps39_15086188.80E-26
PF00637.21Clathrin6387683.90E-08
PF10367.10Vps39_28819895.90E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20183VPS39, VAM6 Autophagy - yeast map04138

Gene Ontology

GO term OntologyName
GO:0006886biological_processintracellular protein transport
GO:0016192biological_processvesicle-mediated transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.074
SRR3591706second leaf15.754
SRR3591707mature leaf16.863
SRR3591708Shoot apex18.902
SRR3591709Stem25.634
SRR3591710White floral bud25.757
SRR3591711White flower29.161
SRR3591712Green floral bud19.507
SRR3591713Yellow flower27.182
SRP173429 SRR8316895Juvenile bud stage 12.577
SRR8316896Juvenile bud stage 16.598
SRR8316897Juvenile bud stage 8.078
SRR8316894Third green stage 8.348
SRR8316900Third green stage 23.208
SRR8316901Third green stage 21.840
SRR8316898Complete white stage 12.775
SRR8316899Complete white stage 31.234
SRR8316903Complete white stage 22.736
SRR8316902Silver flowering stage11.478
SRR8316904Silver flowering stage22.746
SRR8316905Silver flowering stage11.035
SRR8316906Gold flowering stage 30.891
SRR8316907Gold flowering stage 28.762
SRR8316908Gold flowering stage 32.555
SRP132670SRR6706286Control12.656
SRR6706287Light intensity 50%14.116
SRR6706288Light intensity 20%15.155
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.769
CNS0095593Slightly white alabastrum(diploid) 212.794
CNS0095594Slightly white alabastrum(diploid) 311.031
CNS0095595Whole white alabastrum(diploid) 211.572
CNS0095596Whole white alabastrum(diploid) 312.396
CNS0095597Whole white alabastrum(diploid) 412.247
CNS0095598Silvery flower (diploied) 121.212
CNS0095599Silvery flower (diploied) 218.289
CNS0095600Silvery flower (diploied) 338.116
CNS0095601Golden flower (diploid) 117.959
CNS0095602Golden flower (diploid) 236.710
CNS0095603Golden flower (diploid) 334.137
CNS0095604Slightly white alabastrum(tetraploid) 113.775
CNS0095605Slightly white alabastrum(tetraploid) 210.765
CNS0095606Slightly white alabastrum(tetraploid) 324.211
CNS0095607Whole white alabastrum(tetraploid) 111.067
CNS0095608Whole white alabastrum(tetraploid) 29.681
CNS0095609Whole white alabastrum(tetraploid) 320.094
CNS0095610Silvery flower (tetraploid) 132.079
CNS0095611Silvery flower (tetraploid) 236.449
CNS0095612Silvery flower (tetraploid) 325.547
CNS0095613Golden flower (tetraploid) 116.349
CNS0095614Golden flower (tetraploid) 223.748
CNS0095615Golden flower (tetraploid) 324.308
CRA001975CRR073297Stem 118.724
CRR073298Stem 215.020
CRR073299Stem 313.945
CRR073300Leaf 121.626
CRR073301Leaf 215.724
CRR073302Leaf 313.599
CRR073303Juvenile bud 121.906
CRR073304Juvenile bud 215.661
CRR073305Juvenile bud 330.501
CRR073306Third green 118.232
CRR073307Third green 214.682
CRR073308Third green 318.472
CRR073309Second white 117.022
CRR073310Second white 222.628
CRR073311Second white 326.458
CRR073312Silver flowering 122.365
CRR073313Silver flowering 222.297
CRR073314Silver flowering 321.856
CRR073315Gold flowering 112.082
CRR073316Gold flowering 217.440
CRR073317Gold flowering 312.005
CRR073318Tawny withering 115.980
CRR073319Tawny withering 212.410
CRR073320Tawny withering 317.496