Gene detail

Detail information of GWHGAAZE007438

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804698.1	1.0461E-148	PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Nicotiana sylvestris]
trEMBL	tr\|A0A068U1G5\|A0A068U1G5_COFCA	9E-142	Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313\|EMBL:CDP02014.1}
TAIR10	AT1G75230.2	2E-97	DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	45332143	45333099	+
GWHAAZE00000002	mRNA	45332143	45333099	+
GWHAAZE00000002	exon	45332143	45332348	+
GWHAAZE00000002	exon	45332385	45333099	+
GWHAAZE00000002	CDS	45332143	45332348	+
GWHAAZE00000002	CDS	45332385	45333099	+

Transcript Sequence
>GWHTAAZE007446 ATGGGTGACCAACCCCAACCCCATGACAATTCCTCCGCTTCTCAACCTAACCAAACCCCAATCACAGAATCCCCCGCCCCAATTTCCCAAATCCCCTCCTCTAACCCTTCAAAAATCCCAATCCGACCCCAAAAAATCCGAAAACTCTCCTCCACCGACGATCACGACAACGACAAAAATCCCGTAAACATCAACTCAGATTCCTCAACCACCGGGTCCACCACAAAAAAGAGGAGGAACCCTTCCCAATCAGCTAGGGATTTGCAAAGAGTTATCAAACCGTTATCGGCCGAAGGCGAGATAGATCTCGCTCTTCGCCATCTCCGTAAATCCGACCCATTAATGGCTCAATTGATTGATAGCCACCCTCCACCCACATTTGACTCTAACCATCCACCATTTTTAGCCCTAACCAAAAGCATTCTGTACCAACAACTGGCTTATAAAGCCGGTTCCTTGATTTACACTCGCTTTATCGCCCAATGCGGAGGCGAATCCTCAGTAGTGCCCGACACTGTATTATCTTTAACGGCTCAACAGCTTAAACAAATCGGAGTTTCTGCTAGAAAGGCTAGTTATCTTTACGATTTAGCTAATAAGTATAAGACTGGGATTTTGTCTGATGAAACTATTGTGAAAATGGATGATAGGTCTTTGTTCACTATGTTGTCAATGGTGAAGGGGATTGGGTCTTGGTCTGTTCACATGTTTATGATTTTTTCGCTCCATAGACCTGATGTTTTGCCTGTTAGTGATCTTGGTGTAAGAAAAGGGGTGCAGTTTCTTTATGGGTTAGAGGATTTGCCGAAGCCTTCACAAATGGAGCAGTTATGTGAGAAGTGGAAGCCGTATAGGTCGATCGGGGCATGGTATATGTGGCGGTTTGTGGAGGGGAAGGGGACTTCTGCTACTGGAGCGGCG

Network for GWHGAAZE007438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00730.26	HhH-GPD	139	282	3.40E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01247	alkA	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006284	biological_process	base-excision repair
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.161
	SRR3591706	second leaf	29.377
	SRR3591707	mature leaf	20.105
	SRR3591708	Shoot apex	40.409
	SRR3591709	Stem	25.283
	SRR3591710	White floral bud	38.870
	SRR3591711	White flower	44.117
	SRR3591712	Green floral bud	39.363
	SRR3591713	Yellow flower	43.825
SRP173429	SRR8316895	Juvenile bud stage	27.699
	SRR8316896	Juvenile bud stage	33.417
	SRR8316897	Juvenile bud stage	15.145
	SRR8316894	Third green stage	16.976
	SRR8316900	Third green stage	40.987
	SRR8316901	Third green stage	35.521
	SRR8316898	Complete white stage	14.430
	SRR8316899	Complete white stage	41.071
	SRR8316903	Complete white stage	28.022
	SRR8316902	Silver flowering stage	13.008
	SRR8316904	Silver flowering stage	20.949
	SRR8316905	Silver flowering stage	12.200
	SRR8316906	Gold flowering stage	28.836
	SRR8316907	Gold flowering stage	24.189
	SRR8316908	Gold flowering stage	26.142
SRP132670	SRR6706286	Control	56.229
	SRR6706287	Light intensity 50%	50.152
	SRR6706288	Light intensity 20%	52.891
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.640
	CNS0095593	Slightly white alabastrum(diploid) 2	16.170
	CNS0095594	Slightly white alabastrum(diploid) 3	18.094
	CNS0095595	Whole white alabastrum(diploid) 2	12.973
	CNS0095596	Whole white alabastrum(diploid) 3	19.827
	CNS0095597	Whole white alabastrum(diploid) 4	13.659
	CNS0095598	Silvery flower (diploied) 1	14.236
	CNS0095599	Silvery flower (diploied) 2	13.723
	CNS0095600	Silvery flower (diploied) 3	33.835
	CNS0095601	Golden flower (diploid) 1	15.415
	CNS0095602	Golden flower (diploid) 2	37.201
	CNS0095603	Golden flower (diploid) 3	32.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.668
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.130
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.928
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.814
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.573
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.617
	CNS0095610	Silvery flower (tetraploid) 1	32.455
	CNS0095611	Silvery flower (tetraploid) 2	38.006
	CNS0095612	Silvery flower (tetraploid) 3	30.325
	CNS0095613	Golden flower (tetraploid) 1	20.225
	CNS0095614	Golden flower (tetraploid) 2	31.358
	CNS0095615	Golden flower (tetraploid) 3	29.986
CRA001975	CRR073297	Stem 1	24.419
	CRR073298	Stem 2	23.803
	CRR073299	Stem 3	22.634
	CRR073300	Leaf 1	24.643
	CRR073301	Leaf 2	25.277
	CRR073302	Leaf 3	17.610
	CRR073303	Juvenile bud 1	16.229
	CRR073304	Juvenile bud 2	22.421
	CRR073305	Juvenile bud 3	29.702
	CRR073306	Third green 1	13.041
	CRR073307	Third green 2	11.788
	CRR073308	Third green 3	14.029
	CRR073309	Second white 1	21.474
	CRR073310	Second white 2	13.402
	CRR073311	Second white 3	15.943
	CRR073312	Silver flowering 1	16.014
	CRR073313	Silver flowering 2	25.622
	CRR073314	Silver flowering 3	15.714
	CRR073315	Gold flowering 1	7.921
	CRR073316	Gold flowering 2	6.264
	CRR073317	Gold flowering 3	10.039
	CRR073318	Tawny withering 1	16.988
	CRR073319	Tawny withering 2	12.657
	CRR073320	Tawny withering 3	12.725