Detail information of GWHGAAZE007442


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007046899.10Laccase 11 [Theobroma cacao]
Swissprottr|Q8VZA1|LAC11_ARATH0Laccase-11 (Precursor)
trEMBLtr|A0A061DH21|A0A061DH21_THECC0Laccase {ECO:0000256|RuleBase:RU361119}
TAIR10AT5G03260.10laccase 11

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4536762045370302-
GWHAAZE00000002mRNA4536762045370302-
GWHAAZE00000002exon4536762045367750-
GWHAAZE00000002exon4536807345368996-
GWHAAZE00000002exon4536923345369361-
GWHAAZE00000002exon4536944645369584-
GWHAAZE00000002exon4536999245370105-
GWHAAZE00000002exon4537019245370302-
GWHAAZE00000002CDS4537019245370302-
GWHAAZE00000002CDS4536999245370105-
GWHAAZE00000002CDS4536944645369584-
GWHAAZE00000002CDS4536923345369361-
GWHAAZE00000002CDS4536807345368996-
GWHAAZE00000002CDS4536762045367750-
Transcript Sequence

Network for GWHGAAZE007442

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0249


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07732.16Cu-oxidase_338754.60E-06
PF00394.23Cu-oxidase1172656.10E-42
PF07731.15Cu-oxidase_23654973.80E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0046274biological_processlignin catabolic process
GO:0048046cellular_componentapoplast
GO:0005507molecular_functioncopper ion binding
GO:0016491molecular_functionoxidoreductase activity
GO:0052716molecular_functionhydroquinone:oxygen oxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.203
SRR3591706second leaf30.488
SRR3591707mature leaf1.161
SRR3591708Shoot apex8.639
SRR3591709Stem13.294
SRR3591710White floral bud10.605
SRR3591711White flower5.106
SRR3591712Green floral bud18.332
SRR3591713Yellow flower0.356
SRP173429 SRR8316895Juvenile bud stage 13.075
SRR8316896Juvenile bud stage 11.122
SRR8316897Juvenile bud stage 3.992
SRR8316894Third green stage 7.364
SRR8316900Third green stage 33.714
SRR8316901Third green stage 37.105
SRR8316898Complete white stage 0.595
SRR8316899Complete white stage 5.241
SRR8316903Complete white stage 1.434
SRR8316902Silver flowering stage0.658
SRR8316904Silver flowering stage0.709
SRR8316905Silver flowering stage0.455
SRR8316906Gold flowering stage 0.466
SRR8316907Gold flowering stage 0.239
SRR8316908Gold flowering stage 0.065
SRP132670SRR6706286Control29.458
SRR6706287Light intensity 50%23.003
SRR6706288Light intensity 20%22.971
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.983
CNS0095593Slightly white alabastrum(diploid) 24.824
CNS0095594Slightly white alabastrum(diploid) 35.739
CNS0095595Whole white alabastrum(diploid) 23.656
CNS0095596Whole white alabastrum(diploid) 37.311
CNS0095597Whole white alabastrum(diploid) 43.969
CNS0095598Silvery flower (diploied) 12.227
CNS0095599Silvery flower (diploied) 21.069
CNS0095600Silvery flower (diploied) 32.141
CNS0095601Golden flower (diploid) 11.089
CNS0095602Golden flower (diploid) 21.254
CNS0095603Golden flower (diploid) 31.384
CNS0095604Slightly white alabastrum(tetraploid) 11.709
CNS0095605Slightly white alabastrum(tetraploid) 21.321
CNS0095606Slightly white alabastrum(tetraploid) 357.221
CNS0095607Whole white alabastrum(tetraploid) 10.607
CNS0095608Whole white alabastrum(tetraploid) 20.267
CNS0095609Whole white alabastrum(tetraploid) 347.227
CNS0095610Silvery flower (tetraploid) 10.355
CNS0095611Silvery flower (tetraploid) 20.875
CNS0095612Silvery flower (tetraploid) 30.528
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 31.118
CRA001975CRR073297Stem 116.355
CRR073298Stem 29.938
CRR073299Stem 316.069
CRR073300Leaf 120.909
CRR073301Leaf 215.445
CRR073302Leaf 328.703
CRR073303Juvenile bud 13.181
CRR073304Juvenile bud 23.298
CRR073305Juvenile bud 33.534
CRR073306Third green 10.822
CRR073307Third green 22.903
CRR073308Third green 32.483
CRR073309Second white 10.025
CRR073310Second white 20.000
CRR073311Second white 30.027
CRR073312Silver flowering 10.269
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.722
CRR073316Gold flowering 20.651
CRR073317Gold flowering 30.075
CRR073318Tawny withering 11.240
CRR073319Tawny withering 20.903
CRR073320Tawny withering 31.537