Gene detail

Detail information of GWHGAAZE007443

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265804.1	0	PREDICTED: tubby-like F-box protein 5 [Vitis vinifera]
Swissprot	tr\|Q6Z2G9\|TLP5_ORYSJ	0	Tubby-like F-box protein 5
trEMBL	tr\|F6GWV6\|F6GWV6_VITVI	0	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR10	AT2G18280.2	2E-146	tubby like protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	45385205	45387647	+
GWHAAZE00000002	mRNA	45385205	45387647	+
GWHAAZE00000002	exon	45385205	45385552	+
GWHAAZE00000002	exon	45385644	45385731	+
GWHAAZE00000002	exon	45386469	45386598	+
GWHAAZE00000002	exon	45386725	45387647	+
GWHAAZE00000002	CDS	45385205	45385552	+
GWHAAZE00000002	CDS	45385644	45385731	+
GWHAAZE00000002	CDS	45386469	45386598	+
GWHAAZE00000002	CDS	45386725	45387370	+
GWHAAZE00000002	three_prime_UTR	45387371	45387647	+

Transcript Sequence
>GWHTAAZE007451 ATGTCTTTCAAAAGCATTATAAGAGAGTTGAGAGAGATGAAAGATGGGATTGGTAGCACATCAAAGAGGAGCGTTGACGGGAAGCATTGGCGCAACCGAACCCGTTCTCATATTGCCCCTGATATAGCCCCCTTTGAACCAATTGAACAAGGCCGGTGGGCAAACTTACCGCCAGAGTTGCTTTTGGATATAATACAGAGGGTAGAAGAAAGTGAAGTATCGTGGCCTGCAAGAACTGTGGTGGTATTTTGCGCGGCGGTTTGTAAGTCCTGGAGGGATATCACAAAGGAGATAGTCAAGACACCGGAAGAATCTGGAAGGCTCACCTTCCCAATTTCTTTGAAGCAGCCTGGGCCCCGTGATTCTCCACTGCAGTGCTACATAAGAAGAGATAGAGCAACTTCCGTTTACCATCTCTACTTTGGTCTGATGCCGTCGGAAGATGAGAGCCATAAATTATTGTTGGCAGCCAAAAAGATCAGAAGGCCGACAAGCACAGACTTTGTGATATCTTTGGTTGCAGGTGATTTTTCTCGAGCCAGCAATACATATGTTGGCAAACTAAGGTCTAATTTTCTGGGCACAAAGTTCACCATGTACGACAGCCAACCTCCAACCGCCACCGCCGCAGTTCAACCAGTTAGTCATTTGAGCCGAAGATTCAATTCTAATCAAGTATCTCCCAGGATACCCGCATGTAACTACACCATCGGCACGGTCTCCTATGAGCTTAACGTTCTCCGCACAAGAGGCCCTCGAAGAATGCGCTGCATAATGCAATATATCCCCATCTCTTCAATTCAAGAGGGTGGGACTGCCCCAACACCAACTTCGTTCCCGAAGTCCTTAGACGAGAAAATTTCAATCTCACCGGCCTTAAAAGGGACCGAGCCAATCTCCGATACAAGCTCCTCAATTTCCCAAGACCCGCTCATTCTTAAAAACAAGGCACCTAGGTGGCACGAGCAGTTACAATGTTGGTGCCTTAACTTCAAAGGCCGAGTTACGGTAGCTTCCGTGAAGAATTTTCAGCTAGTGGCAGCAGTTGATCCATCTCACAATGTGTCAGCCCTAGAGCAAGAAAAGGTAATTTTACAATTTGGGAAGATTGGAAAAGATATATTTACAATGGATTATCGGTACCCGCTTTCGGCCTTTCAAGCGTTTGCTATTTGCTTGAGCAGCTTTGACACTAAACCGGCATGTGAATGAGAGAGATCCATGGCCAACTTATGATTTGGCATTCGTGTGGGCATAATGTTGTAAAACTGAGAAACTTGGCTGTGCAGGCAGTAGTAGTTTATCTTGTACCAGGCAGTTGTGATATGAAAGCGTTATGTACTTTGGAAATTTGCCTCCTTTGCCTTGTTTTTATGGTGTACATCACTTGGCATTAGACGTGTAATGTAAACAGGGAGAGCATTGAGATATATATACTTATGGATATATGTATTTCTAATGGAACTGTGCTGACTTTTATTTTATTTAA

Network for GWHGAAZE007443

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	53	101	1.80E-08
PF01167.19	Tub	116	398	8.50E-107

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	104.771
	SRR3591706	second leaf	25.995
	SRR3591707	mature leaf	18.333
	SRR3591708	Shoot apex	63.413
	SRR3591709	Stem	74.096
	SRR3591710	White floral bud	55.709
	SRR3591711	White flower	39.100
	SRR3591712	Green floral bud	67.560
	SRR3591713	Yellow flower	24.821
SRP173429	SRR8316895	Juvenile bud stage	43.895
	SRR8316896	Juvenile bud stage	47.862
	SRR8316897	Juvenile bud stage	23.747
	SRR8316894	Third green stage	26.236
	SRR8316900	Third green stage	93.520
	SRR8316901	Third green stage	75.314
	SRR8316898	Complete white stage	41.931
	SRR8316899	Complete white stage	154.151
	SRR8316903	Complete white stage	57.250
	SRR8316902	Silver flowering stage	17.158
	SRR8316904	Silver flowering stage	21.977
	SRR8316905	Silver flowering stage	11.214
	SRR8316906	Gold flowering stage	30.688
	SRR8316907	Gold flowering stage	36.394
	SRR8316908	Gold flowering stage	30.100
SRP132670	SRR6706286	Control	130.727
	SRR6706287	Light intensity 50%	103.001
	SRR6706288	Light intensity 20%	103.406
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.907
	CNS0095593	Slightly white alabastrum(diploid) 2	73.133
	CNS0095594	Slightly white alabastrum(diploid) 3	48.744
	CNS0095595	Whole white alabastrum(diploid) 2	69.351
	CNS0095596	Whole white alabastrum(diploid) 3	66.311
	CNS0095597	Whole white alabastrum(diploid) 4	62.934
	CNS0095598	Silvery flower (diploied) 1	57.954
	CNS0095599	Silvery flower (diploied) 2	51.853
	CNS0095600	Silvery flower (diploied) 3	65.649
	CNS0095601	Golden flower (diploid) 1	65.146
	CNS0095602	Golden flower (diploid) 2	57.635
	CNS0095603	Golden flower (diploid) 3	57.783
	CNS0095604	Slightly white alabastrum(tetraploid) 1	78.638
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.577
	CNS0095606	Slightly white alabastrum(tetraploid) 3	116.040
	CNS0095607	Whole white alabastrum(tetraploid) 1	68.361
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.456
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.550
	CNS0095610	Silvery flower (tetraploid) 1	57.262
	CNS0095611	Silvery flower (tetraploid) 2	70.182
	CNS0095612	Silvery flower (tetraploid) 3	52.155
	CNS0095613	Golden flower (tetraploid) 1	32.178
	CNS0095614	Golden flower (tetraploid) 2	50.458
	CNS0095615	Golden flower (tetraploid) 3	40.347
CRA001975	CRR073297	Stem 1	93.823
	CRR073298	Stem 2	81.539
	CRR073299	Stem 3	60.651
	CRR073300	Leaf 1	111.551
	CRR073301	Leaf 2	126.721
	CRR073302	Leaf 3	76.820
	CRR073303	Juvenile bud 1	103.194
	CRR073304	Juvenile bud 2	65.497
	CRR073305	Juvenile bud 3	192.338
	CRR073306	Third green 1	33.417
	CRR073307	Third green 2	26.237
	CRR073308	Third green 3	33.255
	CRR073309	Second white 1	19.976
	CRR073310	Second white 2	19.982
	CRR073311	Second white 3	16.789
	CRR073312	Silver flowering 1	10.152
	CRR073313	Silver flowering 2	8.054
	CRR073314	Silver flowering 3	6.914
	CRR073315	Gold flowering 1	15.706
	CRR073316	Gold flowering 2	23.120
	CRR073317	Gold flowering 3	11.327
	CRR073318	Tawny withering 1	47.209
	CRR073319	Tawny withering 2	42.550
	CRR073320	Tawny withering 3	61.201