Gene detail

Detail information of GWHGAAZE007448

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009590676.1	PREDICTED: laccase-11-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q8VZA1\|LAC11_ARATH	Laccase-11 (Precursor)
trEMBL	tr\|A0A061DH21\|A0A061DH21_THECC	Laccase {ECO:0000256\|RuleBase:RU361119}
TAIR10	AT5G03260.1	laccase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	45455270	45457924	+
GWHAAZE00000002	mRNA	45455270	45457924	+
GWHAAZE00000002	exon	45455270	45455371	+
GWHAAZE00000002	exon	45455459	45455610	+
GWHAAZE00000002	exon	45455948	45456192	+
GWHAAZE00000002	exon	45456275	45456403	+
GWHAAZE00000002	exon	45456741	45457664	+
GWHAAZE00000002	exon	45457794	45457924	+
GWHAAZE00000002	CDS	45455270	45455371	+
GWHAAZE00000002	CDS	45455459	45455610	+
GWHAAZE00000002	CDS	45455948	45456192	+
GWHAAZE00000002	CDS	45456275	45456403	+
GWHAAZE00000002	CDS	45456741	45457664	+
GWHAAZE00000002	CDS	45457794	45457924	+

Transcript Sequence
>GWHTAAZE007456 ATGGCGAGTAGGGGAAGTTTCTTTTCCGTCCTAAGTATTCTTTTCTTTTCCTTTCTCTCTCTTCTTAATGCAGAGGCAGCCATAAAGAAGTACCAGTTTGACGTTCAAGTGAAGAATGTGAGCAGGTTGTGCCATGCAAAACCAATAGTGACAGTGAATGGGAGATTTCCAGGGCCAACTATTTATGCTAGAGAAGGAGATAGTGTTCAAATAAATGTTACCAACCATGCACAATATAACATGTCTATTCATTGGCATGGATTGAAACAATTTCGCAATGGATGGGCAGATGGACCTGCTTATATAACGCAATGTCCAATTCAAACAGGCAGTAGTTATGTTTATGCCTTCAATGTAACAGGACAAAGAGGGACACTGTGGTGGCATGCACATATTCTTTGGCTGAGAGCTACAGTTTATGGTGCAGTTGTCATCATGCCAAGCAAAGGAACTCCATTTCCCTTCCCTCAGCCAAGCAGAGAGGAAACCATTGTCTTGGGGGAATGGTGGCATGCGGATGTTGAAGAGGTTGTCAAGCAAGGAAACAACTTGGGATTGCCTCCAAATATGTCGGATGCACATACTATAAATGGAAAGCCGGGGCCACTTTTTCCATGTTCCGAGAAACATACTTTTGCAATGGAGGTAGAAAGTGGAAAAACATACCTCTTGAGAATCATCAATGCTGCACTGAATGACGAGCTTTTTTTCGCTGTCGCCAACCACACCCTAACAGTAGTGGAAATCGATGCAGTCTATACAAAACCTTTCACCACTCAAGCTATACTCATAGCACCAGGTCAAACCACAAATGTCCTCGTTAACGCCAATCAAAAAGCCGACAGATACTTCATGGCTGTTAGGCCATTCATAGACGTACCACTCGCCATAGACAACAAAACAGCCACTGCTATACTTCAATACAAAGGAATCCCAAACACTGTCCTCCCAAAATTACCTATATTACCTTCACCAAACAACTCGGCTTTTGCTTTAAGCTACAACAAGAAGCTTAAAAGCCTAAACACACCAAATTTTCCGGCAATTGTGCCTTTAAAAGTTGATAGAAACCTTTTTTTCACAATCGGTTTGGGGATGAACCCTTGTCTGACGTGTGCTAATGGGACCCGCCTCACTGCTTCACTGAACAACATTTCTTTTGTGATGCCCGAGATTGGGCTTCTTCAAGCTCATTACTTCGATACTAAAGGAGTGTTTAGGACCGATTTCCCTGATAAGCCTCCTACTGCTTTTAACTACACCGGTGTGCCACTCACAGCCAATCTTGGCACATTAAAAGGAACAAGACTGAGTAAGATAGCCTTCAATTCAACAGTCGAGTTGGTTTTACAAGACACCAATTTGCTAACGGTGGAATCTCATCCATTCCATCTTCATGGCTATAACTTCTTTGTTGTTGGAACTGGCATTGGGAATTTCGATCCTGCAAAGGACCCCTCGAAATATAACTTGGTTGATCCTCCTGAGAGAAATACGGTTGGAGTTCCCACAGGTGGTTGGACAGCCATTCGATTTACAGCTAATAATCCAGGTGTTTGGTTCTTCCACTGTCATTTGGAGCTTCATACTGGTTGGGGACTGAAAACAGCATTTGTTGTAGAAGATGGACCAGGACCCGATCAAACCATTCTACCTCCTCCTAAGGATCTTCCACAATGCTAG

Network for GWHGAAZE007448

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0249

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.16	Cu-oxidase_3	35	148	5.20E-42
PF00394.23	Cu-oxidase	162	310	7.20E-42
PF07731.15	Cu-oxidase_2	410	542	4.50E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046274	biological_process	lignin catabolic process
GO:0055114	biological_process	oxidation-reduction process
GO:0048046	cellular_component	apoplast
GO:0005507	molecular_function	copper ion binding
GO:0052716	molecular_function	hydroquinone:oxygen oxidoreductase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.041
	SRR3591706	second leaf	8.443
	SRR3591707	mature leaf	0.392
	SRR3591708	Shoot apex	2.689
	SRR3591709	Stem	3.236
	SRR3591710	White floral bud	2.989
	SRR3591711	White flower	1.957
	SRR3591712	Green floral bud	5.760
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.376
	SRR8316896	Juvenile bud stage	2.794
	SRR8316897	Juvenile bud stage	1.042
	SRR8316894	Third green stage	1.967
	SRR8316900	Third green stage	12.174
	SRR8316901	Third green stage	12.708
	SRR8316898	Complete white stage	0.357
	SRR8316899	Complete white stage	2.511
	SRR8316903	Complete white stage	0.408
	SRR8316902	Silver flowering stage	0.176
	SRR8316904	Silver flowering stage	0.176
	SRR8316905	Silver flowering stage	0.187
	SRR8316906	Gold flowering stage	0.024
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.114
SRP132670	SRR6706286	Control	8.359
	SRR6706287	Light intensity 50%	7.126
	SRR6706288	Light intensity 20%	7.767
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.322
	CNS0095593	Slightly white alabastrum(diploid) 2	0.602
	CNS0095594	Slightly white alabastrum(diploid) 3	1.194
	CNS0095595	Whole white alabastrum(diploid) 2	0.905
	CNS0095596	Whole white alabastrum(diploid) 3	1.194
	CNS0095597	Whole white alabastrum(diploid) 4	1.007
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.374
	CNS0095600	Silvery flower (diploied) 3	0.576
	CNS0095601	Golden flower (diploid) 1	0.102
	CNS0095602	Golden flower (diploid) 2	0.075
	CNS0095603	Golden flower (diploid) 3	0.070
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.333
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.165
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.136
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.184
	CNS0095610	Silvery flower (tetraploid) 1	0.374
	CNS0095611	Silvery flower (tetraploid) 2	0.133
	CNS0095612	Silvery flower (tetraploid) 3	0.061
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.194
CRA001975	CRR073297	Stem 1	1.939
	CRR073298	Stem 2	1.541
	CRR073299	Stem 3	1.469
	CRR073300	Leaf 1	4.709
	CRR073301	Leaf 2	1.799
	CRR073302	Leaf 3	4.513
	CRR073303	Juvenile bud 1	0.716
	CRR073304	Juvenile bud 2	0.186
	CRR073305	Juvenile bud 3	0.763
	CRR073306	Third green 1	0.141
	CRR073307	Third green 2	0.689
	CRR073308	Third green 3	0.445
	CRR073309	Second white 1	0.094
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.029
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.096
	CRR073320	Tawny withering 3	0.000