Detail information of GWHGAAZE007483


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007046785.11.45126E-87Lateral root primordium protein-related, putative [Theobroma cacao]
Swissprottr|Q9XGX0|SHI_ARATH5E-64Protein SHORT INTERNODES
trEMBLtr|A0A061DFV6|A0A061DFV6_THECC5E-88Lateral root primordium protein-related, putative {ECO:0000313|EMBL:EOX90942.1}
TAIR10AT3G51060.14E-52Lateral root primordium (LRP) protein-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4612063446122590-
GWHAAZE00000002mRNA4612063446122590-
GWHAAZE00000002exon4612198146122590-
GWHAAZE00000002exon4612063446121111-
GWHAAZE00000002CDS4612198146122590-
GWHAAZE00000002CDS4612067546121111-
GWHAAZE00000002three_prime_UTR4612063446120674-
Transcript Sequence

Network for GWHGAAZE007483

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05142.13DUF7021102582.70E-67
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySRS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.444
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.202
SRR3591709Stem0.076
SRR3591710White floral bud0.238
SRR3591711White flower0.238
SRR3591712Green floral bud0.050
SRR3591713Yellow flower0.258
SRP173429 SRR8316895Juvenile bud stage 2.202
SRR8316896Juvenile bud stage 1.709
SRR8316897Juvenile bud stage 0.678
SRR8316894Third green stage 0.158
SRR8316900Third green stage 0.850
SRR8316901Third green stage 1.257
SRR8316898Complete white stage 0.234
SRR8316899Complete white stage 1.059
SRR8316903Complete white stage 0.243
SRR8316902Silver flowering stage0.731
SRR8316904Silver flowering stage0.188
SRR8316905Silver flowering stage0.249
SRR8316906Gold flowering stage 0.726
SRR8316907Gold flowering stage 1.236
SRR8316908Gold flowering stage 1.195
SRP132670SRR6706286Control0.407
SRR6706287Light intensity 50%0.231
SRR6706288Light intensity 20%0.432
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.858
CNS0095593Slightly white alabastrum(diploid) 23.329
CNS0095594Slightly white alabastrum(diploid) 32.070
CNS0095595Whole white alabastrum(diploid) 22.169
CNS0095596Whole white alabastrum(diploid) 31.682
CNS0095597Whole white alabastrum(diploid) 42.992
CNS0095598Silvery flower (diploied) 11.951
CNS0095599Silvery flower (diploied) 23.216
CNS0095600Silvery flower (diploied) 31.544
CNS0095601Golden flower (diploid) 12.597
CNS0095602Golden flower (diploid) 21.337
CNS0095603Golden flower (diploid) 31.061
CNS0095604Slightly white alabastrum(tetraploid) 11.818
CNS0095605Slightly white alabastrum(tetraploid) 22.062
CNS0095606Slightly white alabastrum(tetraploid) 32.464
CNS0095607Whole white alabastrum(tetraploid) 11.830
CNS0095608Whole white alabastrum(tetraploid) 23.005
CNS0095609Whole white alabastrum(tetraploid) 30.526
CNS0095610Silvery flower (tetraploid) 11.140
CNS0095611Silvery flower (tetraploid) 21.527
CNS0095612Silvery flower (tetraploid) 32.181
CNS0095613Golden flower (tetraploid) 10.857
CNS0095614Golden flower (tetraploid) 21.597
CNS0095615Golden flower (tetraploid) 30.547
CRA001975CRR073297Stem 14.115
CRR073298Stem 22.134
CRR073299Stem 31.082
CRR073300Leaf 11.430
CRR073301Leaf 21.967
CRR073302Leaf 30.460
CRR073303Juvenile bud 10.557
CRR073304Juvenile bud 20.493
CRR073305Juvenile bud 31.401
CRR073306Third green 12.127
CRR073307Third green 21.175
CRR073308Third green 32.166
CRR073309Second white 11.883
CRR073310Second white 24.018
CRR073311Second white 32.951
CRR073312Silver flowering 12.483
CRR073313Silver flowering 21.353
CRR073314Silver flowering 31.120
CRR073315Gold flowering 10.471
CRR073316Gold flowering 20.654
CRR073317Gold flowering 30.323
CRR073318Tawny withering 10.509
CRR073319Tawny withering 23.954
CRR073320Tawny withering 31.685