Detail information of GWHGAAZE007485


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01939.11.9437E-70unnamed protein product [Coffea canephora]
Swissprottr|O65515|GATA7_ARATH2E-62GATA transcription factor 7
trEMBLtr|A0A068U185|A0A068U185_COFCA7E-71Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01939.1}
TAIR10AT4G36240.16E-50GATA transcription factor 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4617947546180116+
GWHAAZE00000002mRNA4617947546180116+
GWHAAZE00000002exon4617947546179539+
GWHAAZE00000002exon4617957946179730+
GWHAAZE00000002exon4617980946180116+
GWHAAZE00000002CDS4617947546179539+
GWHAAZE00000002CDS4617957946179730+
GWHAAZE00000002CDS4617980946180116+
Transcript Sequence

Network for GWHGAAZE007485

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00320.28GATA961302.30E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0045893biological_processpositive regulation of transcription, DNA-templated
GO:0005634cellular_componentnucleus
GO:0008270molecular_functionzinc ion binding
GO:0043565molecular_functionsequence-specific DNA binding
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.791
SRR3591706second leaf45.856
SRR3591707mature leaf31.970
SRR3591708Shoot apex93.910
SRR3591709Stem46.298
SRR3591710White floral bud33.659
SRR3591711White flower14.348
SRR3591712Green floral bud23.553
SRR3591713Yellow flower5.489
SRP173429 SRR8316895Juvenile bud stage 11.970
SRR8316896Juvenile bud stage 16.370
SRR8316897Juvenile bud stage 4.985
SRR8316894Third green stage 5.489
SRR8316900Third green stage 12.881
SRR8316901Third green stage 11.927
SRR8316898Complete white stage 5.847
SRR8316899Complete white stage 15.436
SRR8316903Complete white stage 10.874
SRR8316902Silver flowering stage3.170
SRR8316904Silver flowering stage5.045
SRR8316905Silver flowering stage2.853
SRR8316906Gold flowering stage 2.225
SRR8316907Gold flowering stage 2.798
SRR8316908Gold flowering stage 2.247
SRP132670SRR6706286Control10.780
SRR6706287Light intensity 50%10.568
SRR6706288Light intensity 20%11.905
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.720
CNS0095593Slightly white alabastrum(diploid) 221.899
CNS0095594Slightly white alabastrum(diploid) 327.016
CNS0095595Whole white alabastrum(diploid) 218.180
CNS0095596Whole white alabastrum(diploid) 318.599
CNS0095597Whole white alabastrum(diploid) 411.797
CNS0095598Silvery flower (diploied) 123.345
CNS0095599Silvery flower (diploied) 213.649
CNS0095600Silvery flower (diploied) 35.442
CNS0095601Golden flower (diploid) 117.822
CNS0095602Golden flower (diploid) 210.555
CNS0095603Golden flower (diploid) 39.670
CNS0095604Slightly white alabastrum(tetraploid) 128.830
CNS0095605Slightly white alabastrum(tetraploid) 228.797
CNS0095606Slightly white alabastrum(tetraploid) 343.297
CNS0095607Whole white alabastrum(tetraploid) 120.082
CNS0095608Whole white alabastrum(tetraploid) 213.386
CNS0095609Whole white alabastrum(tetraploid) 314.184
CNS0095610Silvery flower (tetraploid) 111.815
CNS0095611Silvery flower (tetraploid) 211.168
CNS0095612Silvery flower (tetraploid) 314.462
CNS0095613Golden flower (tetraploid) 11.921
CNS0095614Golden flower (tetraploid) 221.602
CNS0095615Golden flower (tetraploid) 312.839
CRA001975CRR073297Stem 130.483
CRR073298Stem 229.929
CRR073299Stem 351.384
CRR073300Leaf 118.883
CRR073301Leaf 217.491
CRR073302Leaf 317.908
CRR073303Juvenile bud 111.038
CRR073304Juvenile bud 28.377
CRR073305Juvenile bud 312.992
CRR073306Third green 18.949
CRR073307Third green 215.510
CRR073308Third green 317.357
CRR073309Second white 10.479
CRR073310Second white 22.134
CRR073311Second white 30.577
CRR073312Silver flowering 10.000
CRR073313Silver flowering 21.007
CRR073314Silver flowering 31.526
CRR073315Gold flowering 16.534
CRR073316Gold flowering 25.987
CRR073317Gold flowering 39.548
CRR073318Tawny withering 158.000
CRR073319Tawny withering 230.996
CRR073320Tawny withering 360.271