Gene detail

Detail information of GWHGAAZE007486

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAT39511.1	5.4143E-176	ferulate 5-hydroxylase [Camptotheca acuminata]
Swissprot	tr\|Q42600\|C84A1_ARATH	1E-137	Cytochrome P450 84A1
trEMBL	tr\|Q6IV45\|Q6IV45_CAMAC	2E-176	Ferulate 5-hydroxylase {ECO:0000313\|EMBL:AAT39511.1}
TAIR10	AT4G36220.1	5E-108	ferulic acid 5-hydroxylase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46215749	46216696	+
GWHAAZE00000002	mRNA	46215749	46216696	+
GWHAAZE00000002	exon	46215749	46216696	+
GWHAAZE00000002	CDS	46215749	46216696	+

Transcript Sequence
>GWHTAAZE007494 ATGGAAGTGGATTCTCTTATTGAGGCATTACAATCCATACCCATGACACTAGTCTTCATCCTCCCCTTACTATTCGTCTTCTTCCTATCTCGCTTCCGCCGGAAACTGCCGTACCCACCAGGCCCACGTGGCTGGCCGGTGATCGGCAACATGGACATGGTGGACCAACTGACCCACCGTGGATTAGCTAAACTGGCCACCAAATACGGTGGAATCTTCCACCTCAAAATTGGATTCCTCCACATGGTGGCGGTCTCCTCTCCGGACGTGGCCCGCCAAGTCCTTCAAGTCCAAGACAACATATTCTCCAACCGCCCCGCCACCATCGCGATAAGCTACCTCACGTACGACCGTGCGGACATGGCGTTTGCACACTACGGCCCGTTCTGGCGCCAGATGCGCAAACTTTGCGTACTGAAACTCTTCAGTAGAAAACGAGCAGAGTCCTGGGACTCTGTGCGCGATGAAGTGGATGCGATGGTGAACACTGTCACCATTGCATCTAACACCGGCTCGCAAGTAAACATCGGCGAGCTGGTATTCGGGCTCACCCGGGATATTATCTACCGGGCGGCTTTTGGGTCCACTTCCCATGAGGGGCAAGACGAGTTCATTAAGATATTACAAGAGTTTTCGAAACTTTTTGGTGCTTTTAATATAGCGGATTTTTTCCCGAGCCTTGGGTGGGCTGACCCGCAGGGTCTCAACTTGAGGCTGGCTAAGGCTCGGGCCGCGCTGGATGGGTTCATTGATTCTATTATCGACGAACATTTGGAGAAAAAGAAGGCCGGTTTCGTGTCCGATGAGGTCGAAACCGATATGGTTGACGAGTTATTGGCATTTTACAGTGAAGAAGCTAAAGTGAATGAGAGCGAAGATTTGCAAAACTCTATAAAGCTTACAAGGGATAATATCAAAGCTATCATCATGGTAAGTACTCCATTTTAA

Network for GWHGAAZE007486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	39	310	1.80E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.888
	SRR3591706	second leaf	1.119
	SRR3591707	mature leaf	2.055
	SRR3591708	Shoot apex	0.482
	SRR3591709	Stem	290.715
	SRR3591710	White floral bud	0.897
	SRR3591711	White flower	0.764
	SRR3591712	Green floral bud	2.070
	SRR3591713	Yellow flower	2.190
SRP173429	SRR8316895	Juvenile bud stage	52.782
	SRR8316896	Juvenile bud stage	25.145
	SRR8316897	Juvenile bud stage	3.628
	SRR8316894	Third green stage	2.338
	SRR8316900	Third green stage	1.246
	SRR8316901	Third green stage	2.127
	SRR8316898	Complete white stage	2.834
	SRR8316899	Complete white stage	0.545
	SRR8316903	Complete white stage	1.045
	SRR8316902	Silver flowering stage	17.365
	SRR8316904	Silver flowering stage	56.637
	SRR8316905	Silver flowering stage	40.898
	SRR8316906	Gold flowering stage	355.737
	SRR8316907	Gold flowering stage	382.611
	SRR8316908	Gold flowering stage	190.860
SRP132670	SRR6706286	Control	4.012
	SRR6706287	Light intensity 50%	3.751
	SRR6706288	Light intensity 20%	2.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.098
	CNS0095593	Slightly white alabastrum(diploid) 2	0.336
	CNS0095594	Slightly white alabastrum(diploid) 3	10.560
	CNS0095595	Whole white alabastrum(diploid) 2	0.117
	CNS0095596	Whole white alabastrum(diploid) 3	0.400
	CNS0095597	Whole white alabastrum(diploid) 4	0.087
	CNS0095598	Silvery flower (diploied) 1	0.129
	CNS0095599	Silvery flower (diploied) 2	0.545
	CNS0095600	Silvery flower (diploied) 3	14.111
	CNS0095601	Golden flower (diploid) 1	1.325
	CNS0095602	Golden flower (diploid) 2	41.834
	CNS0095603	Golden flower (diploid) 3	41.164
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.960
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.060
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.738
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.044
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.072
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.234
	CNS0095610	Silvery flower (tetraploid) 1	0.238
	CNS0095611	Silvery flower (tetraploid) 2	0.543
	CNS0095612	Silvery flower (tetraploid) 3	0.589
	CNS0095613	Golden flower (tetraploid) 1	0.512
	CNS0095614	Golden flower (tetraploid) 2	1.938
	CNS0095615	Golden flower (tetraploid) 3	0.400
CRA001975	CRR073297	Stem 1	87.124
	CRR073298	Stem 2	49.349
	CRR073299	Stem 3	35.295
	CRR073300	Leaf 1	0.860
	CRR073301	Leaf 2	0.823
	CRR073302	Leaf 3	0.972
	CRR073303	Juvenile bud 1	0.647
	CRR073304	Juvenile bud 2	0.572
	CRR073305	Juvenile bud 3	0.429
	CRR073306	Third green 1	37.437
	CRR073307	Third green 2	40.401
	CRR073308	Third green 3	41.253
	CRR073309	Second white 1	939.096
	CRR073310	Second white 2	393.092
	CRR073311	Second white 3	771.913
	CRR073312	Silver flowering 1	656.086
	CRR073313	Silver flowering 2	523.520
	CRR073314	Silver flowering 3	563.042
	CRR073315	Gold flowering 1	0.868
	CRR073316	Gold flowering 2	1.159
	CRR073317	Gold flowering 3	1.375
	CRR073318	Tawny withering 1	45.916
	CRR073319	Tawny withering 2	29.303
	CRR073320	Tawny withering 3	81.879