Detail information of GWHGAAZE007499


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010266939.11.3079E-51PREDICTED: F-box protein SKIP23-like [Nelumbo nucifera]
Swissprottr|Q3EBZ2|SKI23_ARATH9E-19F-box protein SKIP23
trEMBLtr|K4BCZ9|K4BCZ9_SOLLC4E-57Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g092020.1.1}
TAIR10AT2G17030.11E-17F-box family protein with a domain of unknown function (DUF295)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4644268746443901-
GWHAAZE00000002mRNA4644268746443901-
GWHAAZE00000002exon4644268746443901-
GWHAAZE00000002CDS4644268746443901-
Transcript Sequence

Network for GWHGAAZE007499

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0228


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03478.19DUF2953173768.80E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.741
SRR3591711White flower3.281
SRR3591712Green floral bud1.588
SRR3591713Yellow flower4.373
SRP173429 SRR8316895Juvenile bud stage 7.140
SRR8316896Juvenile bud stage 10.196
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 4.958
SRR8316900Third green stage 18.838
SRR8316901Third green stage 16.368
SRR8316898Complete white stage 9.767
SRR8316899Complete white stage 19.633
SRR8316903Complete white stage 11.682
SRR8316902Silver flowering stage7.938
SRR8316904Silver flowering stage10.545
SRR8316905Silver flowering stage5.500
SRR8316906Gold flowering stage 19.670
SRR8316907Gold flowering stage 15.261
SRR8316908Gold flowering stage 5.087
SRP132670SRR6706286Control5.627
SRR6706287Light intensity 50%7.610
SRR6706288Light intensity 20%8.559
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.604
CNS0095593Slightly white alabastrum(diploid) 28.575
CNS0095594Slightly white alabastrum(diploid) 310.337
CNS0095595Whole white alabastrum(diploid) 210.471
CNS0095596Whole white alabastrum(diploid) 312.247
CNS0095597Whole white alabastrum(diploid) 411.142
CNS0095598Silvery flower (diploied) 18.078
CNS0095599Silvery flower (diploied) 27.787
CNS0095600Silvery flower (diploied) 320.002
CNS0095601Golden flower (diploid) 18.559
CNS0095602Golden flower (diploid) 215.235
CNS0095603Golden flower (diploid) 317.704
CNS0095604Slightly white alabastrum(tetraploid) 114.701
CNS0095605Slightly white alabastrum(tetraploid) 213.796
CNS0095606Slightly white alabastrum(tetraploid) 317.475
CNS0095607Whole white alabastrum(tetraploid) 113.524
CNS0095608Whole white alabastrum(tetraploid) 214.509
CNS0095609Whole white alabastrum(tetraploid) 322.428
CNS0095610Silvery flower (tetraploid) 129.534
CNS0095611Silvery flower (tetraploid) 230.484
CNS0095612Silvery flower (tetraploid) 324.311
CNS0095613Golden flower (tetraploid) 123.195
CNS0095614Golden flower (tetraploid) 226.900
CNS0095615Golden flower (tetraploid) 329.647
CRA001975CRR073297Stem 14.635
CRR073298Stem 25.608
CRR073299Stem 36.256
CRR073300Leaf 15.528
CRR073301Leaf 25.872
CRR073302Leaf 35.625
CRR073303Juvenile bud 16.726
CRR073304Juvenile bud 28.424
CRR073305Juvenile bud 34.407
CRR073306Third green 14.855
CRR073307Third green 24.716
CRR073308Third green 34.445
CRR073309Second white 18.309
CRR073310Second white 26.152
CRR073311Second white 36.447
CRR073312Silver flowering 16.580
CRR073313Silver flowering 23.920
CRR073314Silver flowering 33.580
CRR073315Gold flowering 13.424
CRR073316Gold flowering 23.578
CRR073317Gold flowering 33.027
CRR073318Tawny withering 13.912
CRR073319Tawny withering 23.993
CRR073320Tawny withering 33.509