Gene detail

Detail information of GWHGAAZE007504

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010649057.1	0	PREDICTED: NAC domain-containing protein 7 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9FWX2\|NAC7_ARATH	3E-105	NAC domain-containing protein 7
trEMBL	tr\|F6GWP2\|F6GWP2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44377.1}
TAIR10	AT2G18060.1	1E-110	vascular related NAC-domain protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46556921	46560621	+
GWHAAZE00000002	mRNA	46556921	46560621	+
GWHAAZE00000002	exon	46556921	46556949	+
GWHAAZE00000002	exon	46557455	46557637	+
GWHAAZE00000002	exon	46557982	46558253	+
GWHAAZE00000002	exon	46560031	46560621	+
GWHAAZE00000002	five_prime_UTR	46556921	46556949	+
GWHAAZE00000002	five_prime_UTR	46557455	46557483	+
GWHAAZE00000002	CDS	46557484	46557637	+
GWHAAZE00000002	CDS	46557982	46558253	+
GWHAAZE00000002	CDS	46560031	46560621	+

Transcript Sequence
>GWHTAAZE007512 TCAAACCCTGGCCTTCCACAACACAACAGAAACAACAGTACTCGCTGTGACGGATACGATGGAATCATGTGTCCCACCCGGATTTAGGTTCCATCCAACGGACGAGGAGCTAGTAGGGTACTACCTGAGGAAGAAGATCGCGTCACAAAAGATCGATCTTGATGTTATTCGAGATATTGATCTTTACAGAATCGAACCATGGGATCTCATAGAGAGGTGTAGAATTGGATACGAGGAGCAAAACGAGTGGTATTTTTTCAGTCACAAGGATAAGAAGTATCCAACAGGGACAAGAACTAATAGGGCGACCATGGCGGGGTTTTGGAAGGCTACTGGGAGAGACAAGGCGGTGTATGATAAGATGAAGTTGATTGGAATGAGGAAAACCCTAGTTTTCTACCGAGGTAGGGCACCAAACGGTCAGAAAACTGATTGGATCATGCATGAATATAGGCTCGAATCGGACGACAATGGTCCTCCGCAGGAAGAAGGATGGGTGGTATGTCGAGCATTCAAGAAGCGAATAACGGCCCAAACAAAGAGCACAGAGGGTTGGGATTCGACCTCTTTTTATGATGAATCAAGTAGCATTAGCTCGGTGGTCGAACCACTGGATTACATTACAAGAAATCGGCCAAACTACTTATCCCAAAGTGTCATTTGCAAGCAAGAATTCGAAGGCGATTTTATTAATCCGAATTTTATTCACTCGGATCAACAATTCGTACAACTTCCACAACTAGAGAGCCCATCACTTCCTTTAAGTACAAAGAGGCCAATTAGCTCGAATAAAATCGTGGCTGAAAATAATGAGGAAGAAGAAAATATTAGAAGGTACAATAATGTTAATGCGCCAAAAACAGTGACTGATTGGAGGGCACTTGACAAATTTGTGGCTTCTCAATTGAGCCAAGATGAAGGAGATGTTAATGGAGTTTCAAGCTTTGGAGCACATTATGATGATGAGATGGAGGCATTATTGTTCTTGGAGGGTGATGGGGAAGAAGGGGGGAAATTAGGGTTTTTGAGTTCAGGTTCAGATTGTGATATTGGGATTTGCATATTTGATAAATGA

Network for GWHGAAZE007504

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	6	133	1.60E-37

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.974
	SRR3591706	second leaf	2.081
	SRR3591707	mature leaf	0.009
	SRR3591708	Shoot apex	0.692
	SRR3591709	Stem	4.053
	SRR3591710	White floral bud	0.123
	SRR3591711	White flower	0.518
	SRR3591712	Green floral bud	0.330
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.336
	SRR8316896	Juvenile bud stage	0.622
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.529
	SRR8316900	Third green stage	0.234
	SRR8316901	Third green stage	0.317
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.277
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.089
SRP132670	SRR6706286	Control	0.218
	SRR6706287	Light intensity 50%	0.160
	SRR6706288	Light intensity 20%	0.219
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.531
	CNS0095593	Slightly white alabastrum(diploid) 2	1.755
	CNS0095594	Slightly white alabastrum(diploid) 3	0.617
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.288
	CNS0095597	Whole white alabastrum(diploid) 4	0.026
	CNS0095598	Silvery flower (diploied) 1	0.610
	CNS0095599	Silvery flower (diploied) 2	0.584
	CNS0095600	Silvery flower (diploied) 3	0.072
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.188
	CNS0095603	Golden flower (diploid) 3	0.453
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.331
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.072
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.002
	CNS0095614	Golden flower (tetraploid) 2	0.028
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.361
	CRR073298	Stem 2	1.886
	CRR073299	Stem 3	2.981
	CRR073300	Leaf 1	0.353
	CRR073301	Leaf 2	0.502
	CRR073302	Leaf 3	0.490
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.105
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.004
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.098
	CRR073312	Silver flowering 1	0.135
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.183
	CRR073316	Gold flowering 2	0.218
	CRR073317	Gold flowering 3	0.432
	CRR073318	Tawny withering 1	1.519
	CRR073319	Tawny withering 2	0.361
	CRR073320	Tawny withering 3	2.311