Gene detail

Detail information of GWHGAAZE007509

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588908.1	0	PREDICTED: GDP-mannose 4,6 dehydratase 1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SNY3\|GMD1_ARATH	0	GDP-mannose 4,6 dehydratase 1
trEMBL	tr\|B7XH28\|B7XH28_NICBE	0	GDP-mannose 4,6-dehydratase {ECO:0000313\|EMBL:BAH10700.2}
TAIR10	AT5G66280.1	4E-180	GDP-D-mannose 4,6-dehydratase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46603437	46605079	-
GWHAAZE00000002	mRNA	46603437	46605079	-
GWHAAZE00000002	exon	46603437	46603808	-
GWHAAZE00000002	exon	46604414	46605079	-
GWHAAZE00000002	CDS	46604414	46605079	-
GWHAAZE00000002	CDS	46603437	46603808	-

Transcript Sequence
>GWHTAAZE007517 ATGGCATCCTCCACCACCACGACAACCGCTAACGGCGGCGATTCAAAGCGCAAGGTAGCCTTAATCACCGGAATCACAGGCCAAGACGGATCCTACCTAACCGAATTCCTCCTCAACAAGAACTACGAGGTCCACGGCTTAATCCGCCGATCCTCCAATTTCAACACACAACGAATCAACCACATCTACATCGATCCACACAACTCTCAAAAAGCTCTAATGAAGCTCCATTACGCTGATCTCACCGATGCCTCCTCTCTCCGCCGCTGGCTCGACACAATTCTCCCCGACGAGGTCTACAACCTCGCCGCTCAATCACACGTCGCCGTTTCGTTCGAGATCCCTGACTACACTGCCGATGTAGTCGCCACCGGTGCTCTCCGCCTCCTCGAGGCGGTGAGATCTCACATTTCGGCCTCCGGAAGATCTCATATTAAGTATTATCAGGCTGGATCTTCGGAGATGTTTGGATCTACGCCGCCTCCGCAATCGGAAACGACGCCGTTTCATCCTAGGTCACCGTACGCGGCATCGAAATGTGCTGCGCATTGGTACACGGTGAATTACAGAGAGGCGTATGGGATCTATGCTTGTAATGGAATTTTGTTTAATCATGAATCGCCGAGGCGAGGAGAAAATTTCGTGACGCGTAAGATCACACGCGCGGCTTCTAGGGATTGGGGATTCGCAGGCGATTACGTGGAGGCGATGTGGTTAATGCTGCAGCAGGAGAAGCCGGACGATTATGTGGTGGCGACGGAGGAATCTCACACAGTGGAGGAGTTTTTGGAGGTTTCGTTTGGTTACGTTGGATTGAATTGGAGAGATCATGTGGTGATTGATAAGAGGTATTTTAGGCCAACTGAAGTAGATAATCTGAAGGGGGATTCGAGCAAGGCGAGGAAGGTTTTAGGGTGGAAACCTAAGGTAGGGTTTGAGAAGTTGGTGAAGATGATGGTTGATGAGGATGTAGAGTTGGCTAAGAGAGAGAAAGTGCTTGTTGATGCTGGTTACATGGATGCTCAACAGCAGCCTTGA

Network for GWHGAAZE007509

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	21	223	3.70E-88

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01711	gmd, GMDS	Metabolic pathways	map01100
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0019673	biological_process	GDP-mannose metabolic process
GO:0008446	molecular_function	GDP-mannose 4,6-dehydratase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	93.854
	SRR3591706	second leaf	38.547
	SRR3591707	mature leaf	13.346
	SRR3591708	Shoot apex	46.074
	SRR3591709	Stem	37.297
	SRR3591710	White floral bud	50.765
	SRR3591711	White flower	27.017
	SRR3591712	Green floral bud	207.589
	SRR3591713	Yellow flower	25.927
SRP173429	SRR8316895	Juvenile bud stage	58.830
	SRR8316896	Juvenile bud stage	96.310
	SRR8316897	Juvenile bud stage	83.190
	SRR8316894	Third green stage	46.294
	SRR8316900	Third green stage	135.108
	SRR8316901	Third green stage	142.788
	SRR8316898	Complete white stage	38.396
	SRR8316899	Complete white stage	108.828
	SRR8316903	Complete white stage	48.706
	SRR8316902	Silver flowering stage	17.061
	SRR8316904	Silver flowering stage	17.805
	SRR8316905	Silver flowering stage	10.328
	SRR8316906	Gold flowering stage	22.862
	SRR8316907	Gold flowering stage	27.871
	SRR8316908	Gold flowering stage	40.734
SRP132670	SRR6706286	Control	154.555
	SRR6706287	Light intensity 50%	164.015
	SRR6706288	Light intensity 20%	161.389
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	128.509
	CNS0095593	Slightly white alabastrum(diploid) 2	129.913
	CNS0095594	Slightly white alabastrum(diploid) 3	130.079
	CNS0095595	Whole white alabastrum(diploid) 2	96.838
	CNS0095596	Whole white alabastrum(diploid) 3	106.943
	CNS0095597	Whole white alabastrum(diploid) 4	101.750
	CNS0095598	Silvery flower (diploied) 1	27.262
	CNS0095599	Silvery flower (diploied) 2	27.687
	CNS0095600	Silvery flower (diploied) 3	33.363
	CNS0095601	Golden flower (diploid) 1	19.172
	CNS0095602	Golden flower (diploid) 2	24.060
	CNS0095603	Golden flower (diploid) 3	27.898
	CNS0095604	Slightly white alabastrum(tetraploid) 1	160.429
	CNS0095605	Slightly white alabastrum(tetraploid) 2	147.994
	CNS0095606	Slightly white alabastrum(tetraploid) 3	186.034
	CNS0095607	Whole white alabastrum(tetraploid) 1	117.615
	CNS0095608	Whole white alabastrum(tetraploid) 2	104.470
	CNS0095609	Whole white alabastrum(tetraploid) 3	200.459
	CNS0095610	Silvery flower (tetraploid) 1	34.954
	CNS0095611	Silvery flower (tetraploid) 2	29.666
	CNS0095612	Silvery flower (tetraploid) 3	36.133
	CNS0095613	Golden flower (tetraploid) 1	22.156
	CNS0095614	Golden flower (tetraploid) 2	31.611
	CNS0095615	Golden flower (tetraploid) 3	20.086
CRA001975	CRR073297	Stem 1	180.582
	CRR073298	Stem 2	204.535
	CRR073299	Stem 3	232.163
	CRR073300	Leaf 1	189.177
	CRR073301	Leaf 2	244.869
	CRR073302	Leaf 3	225.493
	CRR073303	Juvenile bud 1	174.805
	CRR073304	Juvenile bud 2	180.278
	CRR073305	Juvenile bud 3	234.958
	CRR073306	Third green 1	91.478
	CRR073307	Third green 2	81.870
	CRR073308	Third green 3	73.776
	CRR073309	Second white 1	62.252
	CRR073310	Second white 2	37.388
	CRR073311	Second white 3	30.600
	CRR073312	Silver flowering 1	37.442
	CRR073313	Silver flowering 2	47.979
	CRR073314	Silver flowering 3	34.569
	CRR073315	Gold flowering 1	26.268
	CRR073316	Gold flowering 2	34.556
	CRR073317	Gold flowering 3	37.710
	CRR073318	Tawny withering 1	85.884
	CRR073319	Tawny withering 2	65.481
	CRR073320	Tawny withering 3	89.406