Gene detail

Detail information of GWHGAAZE007516

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007046708.1	9.72653E-83	Homeodomain-like superfamily protein, putative [Theobroma cacao]
Swissprot	tr\|Q8LL11\|WUS_PETHY	5E-79	Protein WUSCHEL
trEMBL	tr\|A0A061DFE2\|A0A061DFE2_THECC	4E-83	Homeodomain-like superfamily protein, putative {ECO:0000313\|EMBL:EOX90865.1}
TAIR10	AT2G17950.1	5E-33	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46727420	46729967	+
GWHAAZE00000002	mRNA	46727420	46729967	+
GWHAAZE00000002	exon	46727420	46727810	+
GWHAAZE00000002	exon	46728187	46728284	+
GWHAAZE00000002	exon	46729605	46729967	+
GWHAAZE00000002	five_prime_UTR	46727420	46727458	+
GWHAAZE00000002	CDS	46727459	46727810	+
GWHAAZE00000002	CDS	46728187	46728284	+
GWHAAZE00000002	CDS	46729605	46729967	+

Transcript Sequence
>GWHTAAZE007524 ACGCACACATATATCTTTTTCTTTACAAACCCATAGATAATGGAGCAACAACAACAACAAAATGGGCAAGTTGGAAATGATCAAGAAGGAAAAAACAGTAATTATACCATGTGTAGGCAAAGTAGTACAAGGTGGACACCAACAAGTGAGCAGATAAGGATATTGAAGGAGCTTTACTACAACAATGGGGTTAGGTCCCCAAGTGCTGAACAGATTCAGAGGATCTCTGCTAGGCTCAGGCAGTACGGAAAGATTGAAGGCAAAAATGTTTTCTATTGGTTTCAAAATCATAAAGCTCGCGAAAGGCAAAAGAAGAGATTCACTTCTGATCCTCCTCATCCTACAATCCCCTTTTACCACAACACCTACTCTAATAACCATCTCTCTCATGGGGTTCCATCTTCTTCATCTACGTCACATGGAGTGCATGCTGTGGGTCATGTCGGAAGTTACGGTTATGGATCTGTGGCCATGGAGAAAAGTTTTAGGGACTGTTCAATATCACCAAGAGATCATAGCAAAGGTGGAAAAATAGGGCACAACTTTGGATGGATGGGCATGGATCATCCACATTCTTCAACAGTACCCTACCCTTTTCTTGATCAAAACAGAAATCCGGATGAATACGAAACCCTAGATCACGATCAAGACGAGGAAGAACAAGAAGAGCAACAATCACAGGAGATTGAAACCCTCCCTCTCTTCCCAATGCATGGCGAAGAAATTAAGGTCTATGAATCAAATGGCAGCTATAACTACAATACTACTAGTAGTACTAATGGCTGGATCAGTTCGCGTGCTTCCCTTGAGCTCAGCCTCAACTCGTACGCCTCAGACTGGTCAATGAATTAA

Network for GWHGAAZE007516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	30	90	3.40E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-WOX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.599
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	23.366
	SRR3591713	Yellow flower	0.187
SRP173429	SRR8316895	Juvenile bud stage	19.342
	SRR8316896	Juvenile bud stage	44.028
	SRR8316897	Juvenile bud stage	12.363
	SRR8316894	Third green stage	16.267
	SRR8316900	Third green stage	58.645
	SRR8316901	Third green stage	40.006
	SRR8316898	Complete white stage	0.986
	SRR8316899	Complete white stage	11.718
	SRR8316903	Complete white stage	0.795
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	29.669
	SRR6706287	Light intensity 50%	27.330
	SRR6706288	Light intensity 20%	31.782
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.692
	CNS0095593	Slightly white alabastrum(diploid) 2	9.729
	CNS0095594	Slightly white alabastrum(diploid) 3	34.329
	CNS0095595	Whole white alabastrum(diploid) 2	13.404
	CNS0095596	Whole white alabastrum(diploid) 3	17.183
	CNS0095597	Whole white alabastrum(diploid) 4	23.964
	CNS0095598	Silvery flower (diploied) 1	0.086
	CNS0095599	Silvery flower (diploied) 2	0.001
	CNS0095600	Silvery flower (diploied) 3	0.096
	CNS0095601	Golden flower (diploid) 1	0.224
	CNS0095602	Golden flower (diploid) 2	0.122
	CNS0095603	Golden flower (diploid) 3	0.590
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.282
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.523
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.349
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.457
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.491
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.154
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	10.340
	CRR073298	Stem 2	13.733
	CRR073299	Stem 3	10.368
	CRR073300	Leaf 1	8.540
	CRR073301	Leaf 2	5.682
	CRR073302	Leaf 3	6.967
	CRR073303	Juvenile bud 1	6.668
	CRR073304	Juvenile bud 2	1.802
	CRR073305	Juvenile bud 3	6.110
	CRR073306	Third green 1	0.535
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000