Detail information of GWHGAAZE007517


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011099833.14.0638E-145PREDICTED: WD repeat-containing protein 82-B [Sesamum indicum]
trEMBLtr|A5B5L2|A5B5L2_VITVI7E-143Putative uncharacterized protein {ECO:0000313|EMBL:CAN80813.1}
TAIR10AT5G66240.15E-101Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4674006346741800-
GWHAAZE00000002mRNA4674006346741800-
GWHAAZE00000002exon4674006346740206-
GWHAAZE00000002exon4674057846740627-
GWHAAZE00000002exon4674101146741095-
GWHAAZE00000002exon4674119946741336-
GWHAAZE00000002exon4674143046741543-
GWHAAZE00000002exon4674168446741800-
GWHAAZE00000002CDS4674168446741800-
GWHAAZE00000002CDS4674143046741543-
GWHAAZE00000002CDS4674119946741336-
GWHAAZE00000002CDS4674101146741095-
GWHAAZE00000002CDS4674057846740627-
GWHAAZE00000002CDS4674006346740206-
Transcript Sequence

Network for GWHGAAZE007517

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD407320.29
PF00400.33WD401411610.077
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14962WDR82, SWD2, CPS35 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.364
SRR3591706second leaf20.257
SRR3591707mature leaf24.363
SRR3591708Shoot apex18.238
SRR3591709Stem19.005
SRR3591710White floral bud29.422
SRR3591711White flower20.196
SRR3591712Green floral bud28.895
SRR3591713Yellow flower19.311
SRP173429 SRR8316895Juvenile bud stage 17.081
SRR8316896Juvenile bud stage 26.671
SRR8316897Juvenile bud stage 9.262
SRR8316894Third green stage 11.420
SRR8316900Third green stage 34.455
SRR8316901Third green stage 34.161
SRR8316898Complete white stage 15.062
SRR8316899Complete white stage 55.536
SRR8316903Complete white stage 26.052
SRR8316902Silver flowering stage11.109
SRR8316904Silver flowering stage16.676
SRR8316905Silver flowering stage7.423
SRR8316906Gold flowering stage 21.055
SRR8316907Gold flowering stage 19.913
SRR8316908Gold flowering stage 18.324
SRP132670SRR6706286Control35.109
SRR6706287Light intensity 50%36.381
SRR6706288Light intensity 20%40.664
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.690
CNS0095593Slightly white alabastrum(diploid) 217.246
CNS0095594Slightly white alabastrum(diploid) 321.172
CNS0095595Whole white alabastrum(diploid) 219.786
CNS0095596Whole white alabastrum(diploid) 321.015
CNS0095597Whole white alabastrum(diploid) 415.553
CNS0095598Silvery flower (diploied) 116.880
CNS0095599Silvery flower (diploied) 210.001
CNS0095600Silvery flower (diploied) 318.361
CNS0095601Golden flower (diploid) 110.905
CNS0095602Golden flower (diploid) 214.759
CNS0095603Golden flower (diploid) 314.656
CNS0095604Slightly white alabastrum(tetraploid) 123.544
CNS0095605Slightly white alabastrum(tetraploid) 218.766
CNS0095606Slightly white alabastrum(tetraploid) 328.791
CNS0095607Whole white alabastrum(tetraploid) 115.700
CNS0095608Whole white alabastrum(tetraploid) 213.349
CNS0095609Whole white alabastrum(tetraploid) 327.143
CNS0095610Silvery flower (tetraploid) 125.109
CNS0095611Silvery flower (tetraploid) 218.503
CNS0095612Silvery flower (tetraploid) 322.177
CNS0095613Golden flower (tetraploid) 115.073
CNS0095614Golden flower (tetraploid) 217.364
CNS0095615Golden flower (tetraploid) 317.237
CRA001975CRR073297Stem 126.579
CRR073298Stem 225.395
CRR073299Stem 314.531
CRR073300Leaf 138.056
CRR073301Leaf 237.360
CRR073302Leaf 318.494
CRR073303Juvenile bud 119.829
CRR073304Juvenile bud 215.416
CRR073305Juvenile bud 324.940
CRR073306Third green 18.827
CRR073307Third green 28.850
CRR073308Third green 37.040
CRR073309Second white 14.831
CRR073310Second white 27.790
CRR073311Second white 37.474
CRR073312Silver flowering 14.575
CRR073313Silver flowering 26.026
CRR073314Silver flowering 35.424
CRR073315Gold flowering 112.077
CRR073316Gold flowering 215.994
CRR073317Gold flowering 37.387
CRR073318Tawny withering 110.564
CRR073319Tawny withering 211.301
CRR073320Tawny withering 311.798