Detail information of GWHGAAZE007518


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009587408.18.62443E-35PREDICTED: WD repeat-containing protein 82-B [Nicotiana tomentosiformis]
trEMBLtr|A0A068U0Q1|A0A068U0Q1_COFCA4E-34Coffea canephora DH200=94 genomic scaffold, scaffold_7 {ECO:0000313|EMBL:CDP01907.1}
TAIR10AT5G66240.21E-20Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4674429446745759-
GWHAAZE00000002mRNA4674429446745759-
GWHAAZE00000002exon4674429446744428-
GWHAAZE00000002exon4674554346745634-
GWHAAZE00000002exon4674575346745759-
GWHAAZE00000002CDS4674575346745759-
GWHAAZE00000002CDS4674554346745634-
GWHAAZE00000002CDS4674429446744428-
Transcript Sequence

Network for GWHGAAZE007518

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14962WDR82, SWD2, CPS35 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.827
SRR3591706second leaf13.001
SRR3591707mature leaf20.803
SRR3591708Shoot apex14.625
SRR3591709Stem13.027
SRR3591710White floral bud24.794
SRR3591711White flower11.917
SRR3591712Green floral bud20.508
SRR3591713Yellow flower17.910
SRP173429 SRR8316895Juvenile bud stage 9.353
SRR8316896Juvenile bud stage 10.284
SRR8316897Juvenile bud stage 5.533
SRR8316894Third green stage 8.491
SRR8316900Third green stage 22.939
SRR8316901Third green stage 19.229
SRR8316898Complete white stage 10.099
SRR8316899Complete white stage 33.848
SRR8316903Complete white stage 13.947
SRR8316902Silver flowering stage5.377
SRR8316904Silver flowering stage10.991
SRR8316905Silver flowering stage4.262
SRR8316906Gold flowering stage 14.947
SRR8316907Gold flowering stage 15.770
SRR8316908Gold flowering stage 13.030
SRP132670SRR6706286Control2.391
SRR6706287Light intensity 50%2.179
SRR6706288Light intensity 20%2.725
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.694
CNS0095593Slightly white alabastrum(diploid) 29.623
CNS0095594Slightly white alabastrum(diploid) 39.233
CNS0095595Whole white alabastrum(diploid) 211.351
CNS0095596Whole white alabastrum(diploid) 39.061
CNS0095597Whole white alabastrum(diploid) 48.393
CNS0095598Silvery flower (diploied) 17.586
CNS0095599Silvery flower (diploied) 28.737
CNS0095600Silvery flower (diploied) 312.106
CNS0095601Golden flower (diploid) 14.444
CNS0095602Golden flower (diploid) 210.511
CNS0095603Golden flower (diploid) 310.922
CNS0095604Slightly white alabastrum(tetraploid) 18.032
CNS0095605Slightly white alabastrum(tetraploid) 24.559
CNS0095606Slightly white alabastrum(tetraploid) 318.317
CNS0095607Whole white alabastrum(tetraploid) 19.107
CNS0095608Whole white alabastrum(tetraploid) 28.646
CNS0095609Whole white alabastrum(tetraploid) 318.588
CNS0095610Silvery flower (tetraploid) 112.624
CNS0095611Silvery flower (tetraploid) 28.966
CNS0095612Silvery flower (tetraploid) 316.115
CNS0095613Golden flower (tetraploid) 17.571
CNS0095614Golden flower (tetraploid) 210.510
CNS0095615Golden flower (tetraploid) 39.974
CRA001975CRR073297Stem 14.792
CRR073298Stem 25.391
CRR073299Stem 31.825
CRR073300Leaf 15.510
CRR073301Leaf 25.994
CRR073302Leaf 34.410
CRR073303Juvenile bud 13.653
CRR073304Juvenile bud 22.714
CRR073305Juvenile bud 34.842
CRR073306Third green 10.493
CRR073307Third green 21.496
CRR073308Third green 31.857
CRR073309Second white 12.001
CRR073310Second white 23.373
CRR073311Second white 30.797
CRR073312Silver flowering 11.724
CRR073313Silver flowering 20.000
CRR073314Silver flowering 32.178
CRR073315Gold flowering 11.847
CRR073316Gold flowering 23.596
CRR073317Gold flowering 31.615
CRR073318Tawny withering 13.562
CRR073319Tawny withering 21.923
CRR073320Tawny withering 33.085