Gene detail

Detail information of GWHGAAZE007523

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009379403.1	4.4824E-117	PREDICTED: transcription factor bHLH121-like [Pyrus x bretschneideri]
Swissprot	tr\|Q9LT23\|BH121_ARATH	5E-70	Transcription factor bHLH121
trEMBL	tr\|A0A061DFA4\|A0A061DFA4_THECC	8E-117	Basic helix-loop-helix DNA-binding superfamily protein isoform 1 {ECO:0000313\|EMBL:EOX90849.1}
TAIR10	AT3G19860.1	6E-54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46869155	46874690	-
GWHAAZE00000002	mRNA	46869155	46874690	-
GWHAAZE00000002	exon	46874626	46874690	-
GWHAAZE00000002	exon	46873619	46873740	-
GWHAAZE00000002	exon	46871233	46871360	-
GWHAAZE00000002	exon	46870214	46870666	-
GWHAAZE00000002	exon	46869155	46869535	-
GWHAAZE00000002	five_prime_UTR	46874670	46874690	-
GWHAAZE00000002	CDS	46874626	46874669	-
GWHAAZE00000002	CDS	46873619	46873740	-
GWHAAZE00000002	CDS	46871233	46871360	-
GWHAAZE00000002	CDS	46870214	46870666	-
GWHAAZE00000002	CDS	46869380	46869535	-
GWHAAZE00000002	three_prime_UTR	46869155	46869379	-

Transcript Sequence
>GWHTAAZE007531 ACAGTAGCCTTTGTTAAGTGAATGGATCAATGGAAAACCACCACCACCAATGATTTCGAGCCCAGGCAAGGGACTGAAGTGGTAGTTAAAGATGCAGTTGCAGCCAGAAAAGTTCAAAAGGCCGACCGTGAAAAGTTGAGAAGGGATAGACTGAATGAGCAGTTTGTTGAGTTAGGAAATGTACTAGATCCAGATCGACCCAAAAATGACAAGGCAACCATTATTATCGATTCAATCCAAACATTGATGGATTTGACTGCTGAGGTTAGTAGACTAAAAGCTGAGTGTGCTTCTCTTTCTGAAGAATCCCGCGAGCTCACACAAGAAAAGAATGAACTAAGAGAAGAGAAGGTATCTCTAAAATCCGATATCGACAACCTTAATGTACAATATCAGCAGAGACTCTCGGTTATGTTTCCGTGGGGTGCCATGGATCCTACGGTTGTAATGGCACCACCTTATTCATATCCAGTTGCTCTTCCGGTCCCTCAAGGTCCAATGACAGTGCACCCATTTCCTTTCTTTGGGAATCAGAATCCTGGTGTTCCTAATACTTGTTCAACTTACATCCCTTACCCGTCTCCTGTGCCTAATCCCCACCACGTTGATCAACCACCTAGTGCGTCCACCTCCCACATTTCTGGCAAACAAGAATGCGGAAGCAAGTCATCAGGTTGTCATAAGGGTAGCAATGAGGAGAAAGGTGACAGTTCAATTGATGTGGGAACAGAACTGGAACTTAAAACGCCTGGATCAACAATTCAGCAGGAGTTGCCACCAAGAGATCAGAAGGGCAAACAAGCACAGAGGAAAGAGGAGAGTATTATTAGAGAGGGGAGTTTTTCAAGCAGACACTCCTCTCGAGGGTTTCAGGATAGCTCTTCAAATAGCATGGGTGACATCCCGAGCTCTAACAACTCGTGAGAAGTTTCCACTTACCTTTCCTCAAATCTCCATTTGACTGTGTAACCTCTTGAGGTAGCAGCATCTTGGTACCATGAACTGATCTAGCCTCTAGGTCGTACATAGCTTTTAATGCAGGTGAGTAGTGATAAATTTCGAGCGCAAGCAAATCTCTGCTATGGGGGAAGAAAGGGTATTCTGTGTGATGATAAGTGGGTTGAGAGCCGAGGGTCGAACAATACTCCG

Network for GWHGAAZE007523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	29	78	2.50E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.449
	SRR3591706	second leaf	6.108
	SRR3591707	mature leaf	4.517
	SRR3591708	Shoot apex	10.630
	SRR3591709	Stem	6.501
	SRR3591710	White floral bud	8.359
	SRR3591711	White flower	7.977
	SRR3591712	Green floral bud	11.816
	SRR3591713	Yellow flower	5.271
SRP173429	SRR8316895	Juvenile bud stage	8.656
	SRR8316896	Juvenile bud stage	10.970
	SRR8316897	Juvenile bud stage	3.618
	SRR8316894	Third green stage	4.530
	SRR8316900	Third green stage	15.139
	SRR8316901	Third green stage	16.713
	SRR8316898	Complete white stage	7.514
	SRR8316899	Complete white stage	28.200
	SRR8316903	Complete white stage	17.021
	SRR8316902	Silver flowering stage	2.266
	SRR8316904	Silver flowering stage	3.004
	SRR8316905	Silver flowering stage	1.952
	SRR8316906	Gold flowering stage	6.071
	SRR8316907	Gold flowering stage	3.281
	SRR8316908	Gold flowering stage	2.934
SRP132670	SRR6706286	Control	14.617
	SRR6706287	Light intensity 50%	17.060
	SRR6706288	Light intensity 20%	16.203
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.227
	CNS0095593	Slightly white alabastrum(diploid) 2	8.574
	CNS0095594	Slightly white alabastrum(diploid) 3	5.401
	CNS0095595	Whole white alabastrum(diploid) 2	12.304
	CNS0095596	Whole white alabastrum(diploid) 3	11.038
	CNS0095597	Whole white alabastrum(diploid) 4	12.146
	CNS0095598	Silvery flower (diploied) 1	4.505
	CNS0095599	Silvery flower (diploied) 2	4.571
	CNS0095600	Silvery flower (diploied) 3	5.675
	CNS0095601	Golden flower (diploid) 1	6.139
	CNS0095602	Golden flower (diploid) 2	4.215
	CNS0095603	Golden flower (diploid) 3	3.666
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.723
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.895
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.527
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.443
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.100
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.226
	CNS0095610	Silvery flower (tetraploid) 1	4.264
	CNS0095611	Silvery flower (tetraploid) 2	5.518
	CNS0095612	Silvery flower (tetraploid) 3	3.176
	CNS0095613	Golden flower (tetraploid) 1	2.417
	CNS0095614	Golden flower (tetraploid) 2	2.949
	CNS0095615	Golden flower (tetraploid) 3	3.813
CRA001975	CRR073297	Stem 1	23.116
	CRR073298	Stem 2	20.279
	CRR073299	Stem 3	13.442
	CRR073300	Leaf 1	34.846
	CRR073301	Leaf 2	27.871
	CRR073302	Leaf 3	24.346
	CRR073303	Juvenile bud 1	23.488
	CRR073304	Juvenile bud 2	24.619
	CRR073305	Juvenile bud 3	25.146
	CRR073306	Third green 1	3.677
	CRR073307	Third green 2	1.730
	CRR073308	Third green 3	2.493
	CRR073309	Second white 1	4.259
	CRR073310	Second white 2	4.490
	CRR073311	Second white 3	4.299
	CRR073312	Silver flowering 1	2.912
	CRR073313	Silver flowering 2	2.163
	CRR073314	Silver flowering 3	1.181
	CRR073315	Gold flowering 1	3.505
	CRR073316	Gold flowering 2	4.293
	CRR073317	Gold flowering 3	7.656
	CRR073318	Tawny withering 1	3.049
	CRR073319	Tawny withering 2	1.435
	CRR073320	Tawny withering 3	2.985