Gene detail

Detail information of GWHGAAZE007528

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265774.1	0	PREDICTED: ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic [Vitis vinifera]
Swissprot	tr\|P00455\|FENR_SPIOL	0	Ferredoxin--NADP reductase, chloroplastic (Precursor)
trEMBL	tr\|D7SNZ1\|D7SNZ1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17370.3}
TAIR10	AT1G20020.1	2E-166	ferredoxin-NADP(+)-oxidoreductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	46993661	46998739	+
GWHAAZE00000002	mRNA	46993661	46998739	+
GWHAAZE00000002	exon	46993661	46993768	+
GWHAAZE00000002	exon	46995045	46995279	+
GWHAAZE00000002	exon	46995366	46995499	+
GWHAAZE00000002	exon	46996526	46996604	+
GWHAAZE00000002	exon	46996926	46997017	+
GWHAAZE00000002	exon	46997175	46997252	+
GWHAAZE00000002	exon	46997812	46997874	+
GWHAAZE00000002	exon	46997974	46998208	+
GWHAAZE00000002	exon	46998672	46998739	+
GWHAAZE00000002	CDS	46993661	46993768	+
GWHAAZE00000002	CDS	46995045	46995279	+
GWHAAZE00000002	CDS	46995366	46995499	+
GWHAAZE00000002	CDS	46996526	46996604	+
GWHAAZE00000002	CDS	46996926	46997017	+
GWHAAZE00000002	CDS	46997175	46997252	+
GWHAAZE00000002	CDS	46997812	46997874	+
GWHAAZE00000002	CDS	46997974	46998208	+
GWHAAZE00000002	CDS	46998672	46998739	+

Transcript Sequence
>GWHTAAZE007536 ATGGCTACTGCAGTAAGTGCTGCAGTCTCTCTTCCATCTTCCAAATCCACTTCCCTTACATCAAGAACATCATCTCTCTTCTCCCCTGAAAGAATCAACTTCATTAAGGTCCCGTTGTACTACAAAAATGTCTCTGGTGGTGGTAAAATGGTATCCATTAGAGCCCAGGTCACAACAGAGGCCCCTGCTAAGGTTGAGAAAGTTTCAAAGAAAATGGAAGAAGGTGTCGTTGTGAACAAATTCAAGCCCAAGAACCCATACATTGGTATGTGTCTTCTCAACACCAAGATTACTGGCGATGATGCACCGGGGGAGACTTGGCACATGGTCTTCAGCACTGAGGGAGAGGTGCCCTACAGAGAAGGGCAGTCCATTGGAGTGATTGCAGATGGTATTGACAAGAATGGGAAGCCTCACAAGCTGAGGTTGTACTCTATTGCTAGCAGTGCCCTTGGTGACTTTGGGGATTCCAAAACAGTTTCTTTGTGTGTGAAAAGGCTGGTGTACACTAATGACCAAGGGGAAGTAGTTAAAGGAGTTTGCTCTAATTTCTTGTGTGACTTGAAACCCGGGGCTGAAGTGAAGATAACTGGACCTGTAGGAAAAGAAATGCTTATGCCAAAGGATCCTAATGCAACCATTATAATGCTTGCTACTGGAACTGGAATTGCTCCTTTCAGATCATTCTTGTGGAAAATGTTCTTTGAGAAGCATGATGACTACAAGTTCAACGGTTTGGCGTGGCTCTTCTTGGGTGTTCCCACAAGCAGTTCGCTGCTCTATAAGGAGGAATTCGAGAAAATGAAGGAGAAGAACCCGGAAAAATTCAGACTCGACTTTGCTGTGAGCAGAGAGCAAACGAATGAGAACGGTGAAAAAATGTATATCCAAACCCGAATGGCTCAATACGCAGAAGAGCTATGGCAATTACTTAAGAAAGACAGCACTTATGTGTATATGTGTGGGCTTAAGGGAATGGAGAAGGGTATTGATGACATTATGGTTTCATTGGCTGCTAGAGACGGCATTGATTGGACGGAGTACAAGAGGCAGTTGAAGAGGGGGGGACAATGGAATGTGGAAGTCTACTAA

Network for GWHGAAZE007528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00175.22	NAD_binding_1	216	331	2.20E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02641	petH	Metabolic pathways	map01100
K02641	petH	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	181.942
	SRR3591706	second leaf	690.181
	SRR3591707	mature leaf	1054.029
	SRR3591708	Shoot apex	237.781
	SRR3591709	Stem	139.410
	SRR3591710	White floral bud	36.592
	SRR3591711	White flower	40.139
	SRR3591712	Green floral bud	30.227
	SRR3591713	Yellow flower	16.698
SRP173429	SRR8316895	Juvenile bud stage	89.759
	SRR8316896	Juvenile bud stage	97.285
	SRR8316897	Juvenile bud stage	64.190
	SRR8316894	Third green stage	40.081
	SRR8316900	Third green stage	86.273
	SRR8316901	Third green stage	72.278
	SRR8316898	Complete white stage	22.787
	SRR8316899	Complete white stage	52.045
	SRR8316903	Complete white stage	38.262
	SRR8316902	Silver flowering stage	10.277
	SRR8316904	Silver flowering stage	18.212
	SRR8316905	Silver flowering stage	6.725
	SRR8316906	Gold flowering stage	13.558
	SRR8316907	Gold flowering stage	18.573
	SRR8316908	Gold flowering stage	18.888
SRP132670	SRR6706286	Control	72.854
	SRR6706287	Light intensity 50%	59.321
	SRR6706288	Light intensity 20%	58.840
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.248
	CNS0095593	Slightly white alabastrum(diploid) 2	29.180
	CNS0095594	Slightly white alabastrum(diploid) 3	40.223
	CNS0095595	Whole white alabastrum(diploid) 2	28.782
	CNS0095596	Whole white alabastrum(diploid) 3	27.306
	CNS0095597	Whole white alabastrum(diploid) 4	25.550
	CNS0095598	Silvery flower (diploied) 1	94.633
	CNS0095599	Silvery flower (diploied) 2	97.939
	CNS0095600	Silvery flower (diploied) 3	53.091
	CNS0095601	Golden flower (diploid) 1	89.390
	CNS0095602	Golden flower (diploid) 2	57.336
	CNS0095603	Golden flower (diploid) 3	58.286
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.862
	CNS0095605	Slightly white alabastrum(tetraploid) 2	52.334
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.340
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.877
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.512
	CNS0095609	Whole white alabastrum(tetraploid) 3	49.491
	CNS0095610	Silvery flower (tetraploid) 1	46.425
	CNS0095611	Silvery flower (tetraploid) 2	69.774
	CNS0095612	Silvery flower (tetraploid) 3	41.604
	CNS0095613	Golden flower (tetraploid) 1	17.083
	CNS0095614	Golden flower (tetraploid) 2	32.449
	CNS0095615	Golden flower (tetraploid) 3	9.513
CRA001975	CRR073297	Stem 1	172.653
	CRR073298	Stem 2	137.045
	CRR073299	Stem 3	170.967
	CRR073300	Leaf 1	47.777
	CRR073301	Leaf 2	58.026
	CRR073302	Leaf 3	47.726
	CRR073303	Juvenile bud 1	41.296
	CRR073304	Juvenile bud 2	31.116
	CRR073305	Juvenile bud 3	59.655
	CRR073306	Third green 1	11.370
	CRR073307	Third green 2	10.306
	CRR073308	Third green 3	14.108
	CRR073309	Second white 1	12.969
	CRR073310	Second white 2	10.007
	CRR073311	Second white 3	7.142
	CRR073312	Silver flowering 1	5.243
	CRR073313	Silver flowering 2	7.151
	CRR073314	Silver flowering 3	4.789
	CRR073315	Gold flowering 1	1198.042
	CRR073316	Gold flowering 2	1521.370
	CRR073317	Gold flowering 3	1208.949
	CRR073318	Tawny withering 1	105.395
	CRR073319	Tawny withering 2	99.264
	CRR073320	Tawny withering 3	95.043