Detail information of GWHGAAZE007539


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007046746.15.5756E-127Serine carboxypeptidase S28 family protein [Theobroma cacao]
Swissprottr|Q1PF50|EDA2_ARATH1E-96Probable serine protease EDA2 (Precursor)
trEMBLtr|A0A061DLP4|A0A061DLP4_THECC2E-127Serine carboxypeptidase S28 family protein {ECO:0000313|EMBL:EOX90903.1}
TAIR10AT4G36195.22E-84Serine carboxypeptidase S28 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4719307547203022-
GWHAAZE00000002mRNA4719307547203022-
GWHAAZE00000002exon4720302047203022-
GWHAAZE00000002exon4720081847201000-
GWHAAZE00000002exon4720053847200654-
GWHAAZE00000002exon4719377147193824-
GWHAAZE00000002exon4719361647193687-
GWHAAZE00000002exon4719307547193308-
GWHAAZE00000002CDS4720302047203022-
GWHAAZE00000002CDS4720081847201000-
GWHAAZE00000002CDS4720053847200654-
GWHAAZE00000002CDS4719377147193824-
GWHAAZE00000002CDS4719361647193687-
GWHAAZE00000002CDS4719307547193308-
Transcript Sequence

Network for GWHGAAZE007539

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0037


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05577.13Peptidase_S28112091.10E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006508biological_processproteolysis
GO:0008236molecular_functionserine-type peptidase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE007539.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.111
SRR3591706second leaf22.625
SRR3591707mature leaf30.086
SRR3591708Shoot apex26.665
SRR3591709Stem43.405
SRR3591710White floral bud34.721
SRR3591711White flower37.631
SRR3591712Green floral bud22.571
SRR3591713Yellow flower35.172
SRP173429 SRR8316895Juvenile bud stage 11.385
SRR8316896Juvenile bud stage 18.627
SRR8316897Juvenile bud stage 15.014
SRR8316894Third green stage 6.902
SRR8316900Third green stage 17.534
SRR8316901Third green stage 16.846
SRR8316898Complete white stage 10.549
SRR8316899Complete white stage 26.726
SRR8316903Complete white stage 18.156
SRR8316902Silver flowering stage11.830
SRR8316904Silver flowering stage18.140
SRR8316905Silver flowering stage7.868
SRR8316906Gold flowering stage 29.392
SRR8316907Gold flowering stage 27.708
SRR8316908Gold flowering stage 42.274
SRP132670SRR6706286Control16.862
SRR6706287Light intensity 50%14.840
SRR6706288Light intensity 20%14.886
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.946
CNS0095593Slightly white alabastrum(diploid) 212.740
CNS0095594Slightly white alabastrum(diploid) 316.485
CNS0095595Whole white alabastrum(diploid) 210.542
CNS0095596Whole white alabastrum(diploid) 39.891
CNS0095597Whole white alabastrum(diploid) 49.608
CNS0095598Silvery flower (diploied) 118.691
CNS0095599Silvery flower (diploied) 216.929
CNS0095600Silvery flower (diploied) 328.518
CNS0095601Golden flower (diploid) 118.376
CNS0095602Golden flower (diploid) 227.541
CNS0095603Golden flower (diploid) 327.554
CNS0095604Slightly white alabastrum(tetraploid) 115.385
CNS0095605Slightly white alabastrum(tetraploid) 213.358
CNS0095606Slightly white alabastrum(tetraploid) 323.688
CNS0095607Whole white alabastrum(tetraploid) 111.291
CNS0095608Whole white alabastrum(tetraploid) 28.521
CNS0095609Whole white alabastrum(tetraploid) 320.938
CNS0095610Silvery flower (tetraploid) 135.699
CNS0095611Silvery flower (tetraploid) 227.987
CNS0095612Silvery flower (tetraploid) 320.838
CNS0095613Golden flower (tetraploid) 118.776
CNS0095614Golden flower (tetraploid) 231.263
CNS0095615Golden flower (tetraploid) 320.555
CRA001975CRR073297Stem 116.040
CRR073298Stem 216.454
CRR073299Stem 317.154
CRR073300Leaf 111.259
CRR073301Leaf 211.120
CRR073302Leaf 310.673
CRR073303Juvenile bud 115.194
CRR073304Juvenile bud 210.284
CRR073305Juvenile bud 317.253
CRR073306Third green 17.505
CRR073307Third green 25.501
CRR073308Third green 39.961
CRR073309Second white 112.883
CRR073310Second white 215.601
CRR073311Second white 39.650
CRR073312Silver flowering 114.814
CRR073313Silver flowering 28.158
CRR073314Silver flowering 36.718
CRR073315Gold flowering 18.915
CRR073316Gold flowering 218.018
CRR073317Gold flowering 311.859
CRR073318Tawny withering 112.098
CRR073319Tawny withering 215.924
CRR073320Tawny withering 314.998