Gene detail

Detail information of GWHGAAZE007539

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007046746.1	5.5756E-127	Serine carboxypeptidase S28 family protein [Theobroma cacao]
Swissprot	tr\|Q1PF50\|EDA2_ARATH	1E-96	Probable serine protease EDA2 (Precursor)
trEMBL	tr\|A0A061DLP4\|A0A061DLP4_THECC	2E-127	Serine carboxypeptidase S28 family protein {ECO:0000313\|EMBL:EOX90903.1}
TAIR10	AT4G36195.2	2E-84	Serine carboxypeptidase S28 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	47193075	47203022	-
GWHAAZE00000002	mRNA	47193075	47203022	-
GWHAAZE00000002	exon	47203020	47203022	-
GWHAAZE00000002	exon	47200818	47201000	-
GWHAAZE00000002	exon	47200538	47200654	-
GWHAAZE00000002	exon	47193771	47193824	-
GWHAAZE00000002	exon	47193616	47193687	-
GWHAAZE00000002	exon	47193075	47193308	-
GWHAAZE00000002	CDS	47203020	47203022	-
GWHAAZE00000002	CDS	47200818	47201000	-
GWHAAZE00000002	CDS	47200538	47200654	-
GWHAAZE00000002	CDS	47193771	47193824	-
GWHAAZE00000002	CDS	47193616	47193687	-
GWHAAZE00000002	CDS	47193075	47193308	-

Transcript Sequence
>GWHTAAZE007547 ATGGGAGCCTTAAATCTGAAGCTCAATAGACCAAATGCGGAAAACCCTTGGTTTGTTTTTGGTGTTTCATACCCTGGAGCTCTTAGTGCATGGTTTCGTCTGAAGTTTCCTCACTTAACATGTGGAAGTCTTGCAAGTTCTGCAGTTGTTCTTGCTGTTTACAATTTCACTGAATTTGATCAGCAGATTGGTGAGTCTGCTGGTCCAGAATGTAAAGCTGTGTTACAAGAAGTTACTAAACTTGTTGAGGAACGGCTTACAACAAATGGAAAAGCTTTGAAGACATTGTTTGGTGCGGCTGAGCTGAAAATTGATGGTGATTTCCTGTATTTCCTGGCGGATGCTGCAGTTATAGCGTTTCAATATGGAAATCCGGATAAACTATGTTCTCCTATGATTGAAGCAAAAAAGGCGGGAGAGGATTTAGTGAATGCATATGCCACATATGTAAAGGAGTATTATGTTGGGAGTTTTGGTGCCAATGTCCAAACATATAATCAGCAACATTTGAAGAACACTGCCGTAGCTGGTGACACCGCCGATCGGTTGTGGTGGTTCCAAGTTTGTACTGAAGTCGCATATTTTCAAGTGGCACCTGCAAATGATAGCATTCGCTCTTCTAGGGTTGACACGAGGCATGTGTATAAGTTTTTCATATGTTGA

Network for GWHGAAZE007539

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0037

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05577.13	Peptidase_S28	11	209	1.10E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008236	molecular_function	serine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.111
	SRR3591706	second leaf	22.625
	SRR3591707	mature leaf	30.086
	SRR3591708	Shoot apex	26.665
	SRR3591709	Stem	43.405
	SRR3591710	White floral bud	34.721
	SRR3591711	White flower	37.631
	SRR3591712	Green floral bud	22.571
	SRR3591713	Yellow flower	35.172
SRP173429	SRR8316895	Juvenile bud stage	11.385
	SRR8316896	Juvenile bud stage	18.627
	SRR8316897	Juvenile bud stage	15.014
	SRR8316894	Third green stage	6.902
	SRR8316900	Third green stage	17.534
	SRR8316901	Third green stage	16.846
	SRR8316898	Complete white stage	10.549
	SRR8316899	Complete white stage	26.726
	SRR8316903	Complete white stage	18.156
	SRR8316902	Silver flowering stage	11.830
	SRR8316904	Silver flowering stage	18.140
	SRR8316905	Silver flowering stage	7.868
	SRR8316906	Gold flowering stage	29.392
	SRR8316907	Gold flowering stage	27.708
	SRR8316908	Gold flowering stage	42.274
SRP132670	SRR6706286	Control	16.862
	SRR6706287	Light intensity 50%	14.840
	SRR6706288	Light intensity 20%	14.886
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.946
	CNS0095593	Slightly white alabastrum(diploid) 2	12.740
	CNS0095594	Slightly white alabastrum(diploid) 3	16.485
	CNS0095595	Whole white alabastrum(diploid) 2	10.542
	CNS0095596	Whole white alabastrum(diploid) 3	9.891
	CNS0095597	Whole white alabastrum(diploid) 4	9.608
	CNS0095598	Silvery flower (diploied) 1	18.691
	CNS0095599	Silvery flower (diploied) 2	16.929
	CNS0095600	Silvery flower (diploied) 3	28.518
	CNS0095601	Golden flower (diploid) 1	18.376
	CNS0095602	Golden flower (diploid) 2	27.541
	CNS0095603	Golden flower (diploid) 3	27.554
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.385
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.358
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.688
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.291
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.521
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.938
	CNS0095610	Silvery flower (tetraploid) 1	35.699
	CNS0095611	Silvery flower (tetraploid) 2	27.987
	CNS0095612	Silvery flower (tetraploid) 3	20.838
	CNS0095613	Golden flower (tetraploid) 1	18.776
	CNS0095614	Golden flower (tetraploid) 2	31.263
	CNS0095615	Golden flower (tetraploid) 3	20.555
CRA001975	CRR073297	Stem 1	16.040
	CRR073298	Stem 2	16.454
	CRR073299	Stem 3	17.154
	CRR073300	Leaf 1	11.259
	CRR073301	Leaf 2	11.120
	CRR073302	Leaf 3	10.673
	CRR073303	Juvenile bud 1	15.194
	CRR073304	Juvenile bud 2	10.284
	CRR073305	Juvenile bud 3	17.253
	CRR073306	Third green 1	7.505
	CRR073307	Third green 2	5.501
	CRR073308	Third green 3	9.961
	CRR073309	Second white 1	12.883
	CRR073310	Second white 2	15.601
	CRR073311	Second white 3	9.650
	CRR073312	Silver flowering 1	14.814
	CRR073313	Silver flowering 2	8.158
	CRR073314	Silver flowering 3	6.718
	CRR073315	Gold flowering 1	8.915
	CRR073316	Gold flowering 2	18.018
	CRR073317	Gold flowering 3	11.859
	CRR073318	Tawny withering 1	12.098
	CRR073319	Tawny withering 2	15.924
	CRR073320	Tawny withering 3	14.998