Detail information of GWHGAAZE007552


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009588908.10PREDICTED: GDP-mannose 4,6 dehydratase 1 [Nicotiana tomentosiformis]
Swissprottr|Q9SNY3|GMD1_ARATH0GDP-mannose 4,6 dehydratase 1
trEMBLtr|B7XH28|B7XH28_NICBE0GDP-mannose 4,6-dehydratase {ECO:0000313|EMBL:BAH10700.2}
TAIR10AT5G66280.14E-180GDP-D-mannose 4,6-dehydratase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene4739976247401407-
GWHAAZE00000002mRNA4739976247401407-
GWHAAZE00000002exon4739976247400133-
GWHAAZE00000002exon4740074247401407-
GWHAAZE00000002CDS4740074247401407-
GWHAAZE00000002CDS4739976247400133-
Transcript Sequence

Network for GWHGAAZE007552

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16363.6GDP_Man_Dehyd212233.70E-88
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01711gmd, GMDS Metabolic pathways map01100
Fructose and mannose metabolismmap00051
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0019673biological_processGDP-mannose metabolic process
GO:0008446molecular_functionGDP-mannose 4,6-dehydratase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.317
SRR3591706second leaf22.786
SRR3591707mature leaf7.938
SRR3591708Shoot apex27.700
SRR3591709Stem21.558
SRR3591710White floral bud29.313
SRR3591711White flower16.605
SRR3591712Green floral bud123.559
SRR3591713Yellow flower14.645
SRP173429 SRR8316895Juvenile bud stage 61.041
SRR8316896Juvenile bud stage 107.808
SRR8316897Juvenile bud stage 37.320
SRR8316894Third green stage 49.777
SRR8316900Third green stage 147.279
SRR8316901Third green stage 148.202
SRR8316898Complete white stage 35.551
SRR8316899Complete white stage 107.996
SRR8316903Complete white stage 42.291
SRR8316902Silver flowering stage15.519
SRR8316904Silver flowering stage17.694
SRR8316905Silver flowering stage9.640
SRR8316906Gold flowering stage 23.170
SRR8316907Gold flowering stage 26.055
SRR8316908Gold flowering stage 21.260
SRP132670SRR6706286Control163.397
SRR6706287Light intensity 50%170.343
SRR6706288Light intensity 20%166.293
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1129.517
CNS0095593Slightly white alabastrum(diploid) 2128.788
CNS0095594Slightly white alabastrum(diploid) 3144.868
CNS0095595Whole white alabastrum(diploid) 294.448
CNS0095596Whole white alabastrum(diploid) 3110.318
CNS0095597Whole white alabastrum(diploid) 496.654
CNS0095598Silvery flower (diploied) 123.394
CNS0095599Silvery flower (diploied) 222.768
CNS0095600Silvery flower (diploied) 332.470
CNS0095601Golden flower (diploid) 117.723
CNS0095602Golden flower (diploid) 225.502
CNS0095603Golden flower (diploid) 326.584
CNS0095604Slightly white alabastrum(tetraploid) 1123.899
CNS0095605Slightly white alabastrum(tetraploid) 2126.043
CNS0095606Slightly white alabastrum(tetraploid) 3141.452
CNS0095607Whole white alabastrum(tetraploid) 198.141
CNS0095608Whole white alabastrum(tetraploid) 281.030
CNS0095609Whole white alabastrum(tetraploid) 3188.387
CNS0095610Silvery flower (tetraploid) 127.275
CNS0095611Silvery flower (tetraploid) 222.162
CNS0095612Silvery flower (tetraploid) 325.043
CNS0095613Golden flower (tetraploid) 117.192
CNS0095614Golden flower (tetraploid) 222.300
CNS0095615Golden flower (tetraploid) 314.145
CRA001975CRR073297Stem 1182.606
CRR073298Stem 2209.353
CRR073299Stem 3241.060
CRR073300Leaf 1198.384
CRR073301Leaf 2243.708
CRR073302Leaf 3219.919
CRR073303Juvenile bud 1171.115
CRR073304Juvenile bud 2174.387
CRR073305Juvenile bud 3227.812
CRR073306Third green 185.045
CRR073307Third green 280.200
CRR073308Third green 368.626
CRR073309Second white 162.910
CRR073310Second white 236.616
CRR073311Second white 329.229
CRR073312Silver flowering 134.351
CRR073313Silver flowering 244.138
CRR073314Silver flowering 333.227
CRR073315Gold flowering 126.496
CRR073316Gold flowering 233.439
CRR073317Gold flowering 337.743
CRR073318Tawny withering 182.424
CRR073319Tawny withering 260.378
CRR073320Tawny withering 386.011